Hb_003125_120

Information

Type -
Description -
Location Contig3125: 101600-106125
Sequence    

Annotation

kegg
ID rcu:RCOM_1506040
description hypothetical protein
nr
ID XP_012090697.1
description PREDICTED: TITAN-like protein [Jatropha curcas]
swissprot
ID F4JRR5
description TITAN-like protein OS=Arabidopsis thaliana GN=TTL PE=2 SV=1
trembl
ID B9RAF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506040 PE=4 SV=1
Gene Ontology
ID GO:0048316
description titan-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33051: 101980-102687 , PASA_asmbl_33052: 103081-104434 , PASA_asmbl_33053: 104965-106305
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003125_120 0.0 - - PREDICTED: TITAN-like protein [Jatropha curcas]
2 Hb_007416_340 0.0428949752 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000334_280 0.0474572406 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
4 Hb_000403_050 0.0491812025 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
5 Hb_001163_050 0.0494466897 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
6 Hb_008453_140 0.0497796777 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
7 Hb_001142_030 0.0525901848 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
8 Hb_000215_110 0.0599523367 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
9 Hb_003428_030 0.060039876 - - tRNA, putative [Ricinus communis]
10 Hb_000484_030 0.0602311228 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
11 Hb_014109_040 0.0609593751 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
12 Hb_003878_070 0.0609791146 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
13 Hb_120410_010 0.0616234483 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
14 Hb_003525_010 0.0630522363 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
15 Hb_000093_160 0.0640664788 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
16 Hb_000563_230 0.0654546857 - - phospholipase d zeta, putative [Ricinus communis]
17 Hb_005271_220 0.0667158428 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
18 Hb_000373_070 0.066950349 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
19 Hb_002518_280 0.0671144568 - - phosphate transporter [Manihot esculenta]
20 Hb_001946_400 0.0672303737 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003125_120 Hb_003125_120 Hb_007416_340 Hb_007416_340 Hb_003125_120--Hb_007416_340 Hb_000334_280 Hb_000334_280 Hb_003125_120--Hb_000334_280 Hb_000403_050 Hb_000403_050 Hb_003125_120--Hb_000403_050 Hb_001163_050 Hb_001163_050 Hb_003125_120--Hb_001163_050 Hb_008453_140 Hb_008453_140 Hb_003125_120--Hb_008453_140 Hb_001142_030 Hb_001142_030 Hb_003125_120--Hb_001142_030 Hb_003938_090 Hb_003938_090 Hb_007416_340--Hb_003938_090 Hb_000484_030 Hb_000484_030 Hb_007416_340--Hb_000484_030 Hb_007416_340--Hb_008453_140 Hb_001946_400 Hb_001946_400 Hb_007416_340--Hb_001946_400 Hb_001922_150 Hb_001922_150 Hb_007416_340--Hb_001922_150 Hb_003878_070 Hb_003878_070 Hb_000334_280--Hb_003878_070 Hb_003525_010 Hb_003525_010 Hb_000334_280--Hb_003525_010 Hb_000334_280--Hb_000403_050 Hb_000334_280--Hb_000484_030 Hb_000215_110 Hb_000215_110 Hb_000334_280--Hb_000215_110 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_001163_050--Hb_001142_030 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_001163_050--Hb_008453_140 Hb_120410_010 Hb_120410_010 Hb_008453_140--Hb_120410_010 Hb_010381_090 Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_001142_030--Hb_120410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53852 2.88769 2.83382 2.62611 3.30968 3.71031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33576 4.7908 2.59604 2.83005 2.7606

CAGE analysis