Hb_002740_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2740: 101261-107227
Sequence    

Annotation

kegg
ID rcu:RCOM_1436840
description hypothetical protein
nr
ID XP_002512587.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O80536
description Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
trembl
ID B9RFR8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1436840 PE=4 SV=1
Gene Ontology
ID GO:0005634
description phytochrome-interacting factor 3 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28662: 100729-107227 , PASA_asmbl_28663: 100729-106776 , PASA_asmbl_28665: 106644-107445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002740_030 0.0 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
2 Hb_001142_030 0.0446083064 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
3 Hb_000416_040 0.0529370491 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
4 Hb_120410_010 0.0580720467 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
5 Hb_000220_010 0.0625748218 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
6 Hb_008453_140 0.0639317189 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
7 Hb_001163_050 0.0645659975 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
8 Hb_002863_050 0.0688391576 - - aldose 1-epimerase, putative [Ricinus communis]
9 Hb_007451_010 0.0715118171 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
10 Hb_036790_100 0.0741817727 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
11 Hb_002872_030 0.0741950842 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
12 Hb_000563_320 0.0741977566 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
13 Hb_000868_110 0.074980207 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
14 Hb_010381_090 0.0752633527 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
15 Hb_003125_120 0.0752825611 - - PREDICTED: TITAN-like protein [Jatropha curcas]
16 Hb_027428_010 0.0754776074 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
17 Hb_156635_010 0.0765080291 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
18 Hb_004116_060 0.0766296038 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
19 Hb_000580_180 0.0769590843 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014720_120 0.0792204477 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_002740_030 Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_002740_030--Hb_001142_030 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_120410_010 Hb_120410_010 Hb_002740_030--Hb_120410_010 Hb_000220_010 Hb_000220_010 Hb_002740_030--Hb_000220_010 Hb_008453_140 Hb_008453_140 Hb_002740_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_002740_030--Hb_001163_050 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_001142_030--Hb_008453_140 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_001142_030--Hb_120410_010 Hb_000563_320 Hb_000563_320 Hb_000416_040--Hb_000563_320 Hb_000416_040--Hb_001142_030 Hb_002863_050 Hb_002863_050 Hb_000416_040--Hb_002863_050 Hb_000416_040--Hb_001163_050 Hb_036790_100 Hb_036790_100 Hb_000416_040--Hb_036790_100 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_000220_010--Hb_008453_140 Hb_007451_010 Hb_007451_010 Hb_000220_010--Hb_007451_010 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_000220_010--Hb_010381_090 Hb_000220_010--Hb_120410_010 Hb_008453_140--Hb_010381_090 Hb_008453_140--Hb_003125_120 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000331_550 Hb_000331_550 Hb_001163_050--Hb_000331_550 Hb_001163_050--Hb_003125_120 Hb_000373_070 Hb_000373_070 Hb_001163_050--Hb_000373_070 Hb_003001_080 Hb_003001_080 Hb_001163_050--Hb_003001_080 Hb_001163_050--Hb_008453_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.7526 16.8937 18.6184 18.2655 17.2361 22.0054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.026 28.2325 17.3377 10.0393 12.2301

CAGE analysis