Hb_183612_040

Information

Type -
Description -
Location Contig183612: 22054-27551
Sequence    

Annotation

kegg
ID tcc:TCM_015986
description P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1
nr
ID XP_012070131.1
description PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
swissprot
ID Q9DBN9
description Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1
trembl
ID A0A067KY10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03389 PE=4 SV=1
Gene Ontology
ID GO:0016787
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17944: 22036-27408 , PASA_asmbl_17945: 22002-27535
cDNA
(Sanger)
(ID:Location)		 043_C24.ab1: 26465-27535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_040 0.0 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
2 Hb_000005_220 0.0570896652 - - DNA ligase 1, partial [Glycine soja]
3 Hb_001089_110 0.0594251364 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002684_040 0.0595959601 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
5 Hb_001433_070 0.0648713221 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
6 Hb_003878_110 0.0654276316 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
7 Hb_079526_030 0.0660309737 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
8 Hb_001143_180 0.0672857725 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
9 Hb_002175_030 0.0676410475 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
10 Hb_000345_380 0.0682698612 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
11 Hb_005337_090 0.0683562729 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like [Jatropha curcas]
12 Hb_003680_150 0.068492241 - - srpk, putative [Ricinus communis]
13 Hb_008159_020 0.0691294961 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
14 Hb_000264_030 0.0697692151 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
15 Hb_005289_040 0.071652109 - - poly(A) polymerase, putative [Ricinus communis]
16 Hb_002784_020 0.0731505337 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
17 Hb_000020_150 0.0733292002 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
18 Hb_000035_110 0.0735638909 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
19 Hb_063716_100 0.0736371232 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
20 Hb_000289_040 0.0736422421 - - Poly(A) polymerase alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_183612_040 Hb_183612_040 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_002684_040 Hb_002684_040 Hb_183612_040--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_183612_040--Hb_001433_070 Hb_003878_110 Hb_003878_110 Hb_183612_040--Hb_003878_110 Hb_079526_030 Hb_079526_030 Hb_183612_040--Hb_079526_030 Hb_000035_110 Hb_000035_110 Hb_000005_220--Hb_000035_110 Hb_005337_090 Hb_005337_090 Hb_000005_220--Hb_005337_090 Hb_007441_020 Hb_007441_020 Hb_000005_220--Hb_007441_020 Hb_002445_100 Hb_002445_100 Hb_000005_220--Hb_002445_100 Hb_005779_010 Hb_005779_010 Hb_000005_220--Hb_005779_010 Hb_001089_110--Hb_079526_030 Hb_001089_110--Hb_001433_070 Hb_001089_110--Hb_005337_090 Hb_000575_040 Hb_000575_040 Hb_001089_110--Hb_000575_040 Hb_000331_110 Hb_000331_110 Hb_001089_110--Hb_000331_110 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_001433_070--Hb_079526_030 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_001433_070--Hb_003878_110 Hb_003878_110--Hb_000331_110 Hb_003878_110--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_079526_030--Hb_000331_110 Hb_001821_160 Hb_001821_160 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4093 9.86615 9.42764 6.66417 9.73359 13.4272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.63839 7.89021 5.42169 9.36134 6.92701

CAGE analysis