Hb_002684_040

Information

Type -
Description -
Location Contig2684: 87243-92445
Sequence    

Annotation

kegg
ID rcu:RCOM_0868170
description hypothetical protein
nr
ID XP_012072633.1
description PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06699 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27943: 87276-87695 , PASA_asmbl_27944: 89061-92419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002684_040 0.0 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
2 Hb_000777_050 0.0540134409 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
3 Hb_183612_040 0.0595959601 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
4 Hb_003878_110 0.060144028 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
5 Hb_000462_060 0.0633194412 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
6 Hb_001635_040 0.0659972453 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
7 Hb_000853_230 0.066631739 - - syntaxin, putative [Ricinus communis]
8 Hb_003680_150 0.0667042945 - - srpk, putative [Ricinus communis]
9 Hb_023480_010 0.066709949 - - cellular nucleic acid binding protein, putative [Ricinus communis]
10 Hb_079526_030 0.0675366458 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
11 Hb_019654_040 0.0676450549 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
12 Hb_001433_070 0.0680080651 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
13 Hb_000084_250 0.0691226238 - - nucleolar phosphoprotein, putative [Ricinus communis]
14 Hb_000109_210 0.0703412373 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
15 Hb_001089_110 0.0712213622 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002272_130 0.071260822 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
17 Hb_000331_110 0.0717304558 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
18 Hb_003638_090 0.0732508189 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
19 Hb_001143_180 0.0736054536 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
20 Hb_000044_040 0.0744637549 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]

Gene co-expression network

sample Hb_002684_040 Hb_002684_040 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_000005_220 Hb_000005_220 Hb_183612_040--Hb_000005_220 Hb_001089_110 Hb_001089_110 Hb_183612_040--Hb_001089_110 Hb_001433_070 Hb_001433_070 Hb_183612_040--Hb_001433_070 Hb_183612_040--Hb_003878_110 Hb_079526_030 Hb_079526_030 Hb_183612_040--Hb_079526_030 Hb_003878_110--Hb_001433_070 Hb_000331_110 Hb_000331_110 Hb_003878_110--Hb_000331_110 Hb_003878_110--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_002732_040 Hb_002732_040 Hb_000462_060--Hb_002732_040 Hb_000343_250 Hb_000343_250 Hb_000462_060--Hb_000343_250 Hb_002272_130 Hb_002272_130 Hb_000462_060--Hb_002272_130 Hb_000789_310 Hb_000789_310 Hb_000462_060--Hb_000789_310 Hb_000617_180 Hb_000617_180 Hb_000462_060--Hb_000617_180 Hb_001047_220 Hb_001047_220 Hb_000462_060--Hb_001047_220 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_006620_020 Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63715 6.27711 7.86635 5.08124 8.51884 9.69383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21183 4.74453 5.4482 6.93609 5.66833

CAGE analysis