Hb_000162_030

Information

Type desease resistance
Description Gene Name: RLI
Location Contig162: 59641-68004
Sequence    

Annotation

kegg
ID tcc:TCM_016698
description RNAse l inhibitor protein 2 isoform 1
nr
ID AIU41641.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q8LPJ4
description ABC transporter E family member 2 OS=Arabidopsis thaliana GN=ABCE2 PE=2 SV=1
trembl
ID A0A097P9S2
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCE2 PE=2 SV=1
Gene Ontology
ID GO:0005215
description abc transporter e family member 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14569: 59563-67939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_030 0.0 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
2 Hb_001635_040 0.0493110898 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
3 Hb_001147_110 0.0545624809 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
4 Hb_001268_280 0.0639331467 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008568_020 0.0640433424 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
6 Hb_004357_020 0.0642532643 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
7 Hb_002276_240 0.0648750827 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
8 Hb_143766_110 0.0658389796 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
9 Hb_001751_140 0.0727826123 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
10 Hb_003633_070 0.0734612403 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
11 Hb_000777_050 0.0738216327 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
12 Hb_002267_140 0.0741523469 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_008062_050 0.0756619739 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
14 Hb_011310_130 0.0758335176 - - DEAD/DEAH box RNA helicase family protein isoform 1 [Theobroma cacao]
15 Hb_184798_080 0.0758755367 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
16 Hb_032264_060 0.0767237023 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
17 Hb_004631_190 0.0768312701 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
18 Hb_004129_070 0.0772585204 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
19 Hb_128548_010 0.0783217166 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001767_140 0.0783756727 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_030 Hb_000162_030 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_002276_240 Hb_002276_240 Hb_000162_030--Hb_002276_240 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_008253_030 Hb_008253_030 Hb_001147_110--Hb_008253_030 Hb_001147_110--Hb_002276_240 Hb_001767_140 Hb_001767_140 Hb_001147_110--Hb_001767_140 Hb_184798_080 Hb_184798_080 Hb_001147_110--Hb_184798_080 Hb_002325_040 Hb_002325_040 Hb_001147_110--Hb_002325_040 Hb_000914_120 Hb_000914_120 Hb_001268_280--Hb_000914_120 Hb_002267_140 Hb_002267_140 Hb_001268_280--Hb_002267_140 Hb_001318_070 Hb_001318_070 Hb_001268_280--Hb_001318_070 Hb_002732_040 Hb_002732_040 Hb_001268_280--Hb_002732_040 Hb_000243_210 Hb_000243_210 Hb_001268_280--Hb_000243_210 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120 Hb_001728_050 Hb_001728_050 Hb_004357_020--Hb_001728_050 Hb_003633_070 Hb_003633_070 Hb_004357_020--Hb_003633_070 Hb_001247_130 Hb_001247_130 Hb_004357_020--Hb_001247_130 Hb_000070_080 Hb_000070_080 Hb_004357_020--Hb_000070_080 Hb_000162_280 Hb_000162_280 Hb_004357_020--Hb_000162_280 Hb_004129_070 Hb_004129_070 Hb_002276_240--Hb_004129_070 Hb_009083_070 Hb_009083_070 Hb_002276_240--Hb_009083_070 Hb_002276_240--Hb_002267_140 Hb_002276_240--Hb_001767_140 Hb_002276_240--Hb_008253_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8778 37.26 39.4403 27.8057 30.373 35.4996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.811 15.6982 23.556 26.9825 23.2592

CAGE analysis