Hb_002615_120

Information

Type -
Description -
Location Contig2615: 125737-158250
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07390g
description POPTRDRAFT_557695; pleckstrin homology domain-containing family protein
nr
ID XP_012065891.1
description PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWQ4
description Rho GTPase-activating protein 7 OS=Arabidopsis thaliana GN=ROPGAP7 PE=2 SV=1
trembl
ID A0A067LGF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22776 PE=4 SV=1
Gene Ontology
ID GO:0007165
description pleckstrin homology domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27356: 126273-135293 , PASA_asmbl_27357: 149212-149426 , PASA_asmbl_27358: 156116-158223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_120 0.0 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
2 Hb_001405_190 0.055365448 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_008568_020 0.0573790454 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
4 Hb_032202_080 0.0578358278 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
5 Hb_000457_230 0.0640190869 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000836_410 0.0669249419 - - sec10, putative [Ricinus communis]
7 Hb_000098_140 0.0677101874 - - hypothetical protein JCGZ_04989 [Jatropha curcas]
8 Hb_000525_100 0.0693586386 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
9 Hb_002067_030 0.0704635923 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
10 Hb_008387_010 0.0705798648 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
11 Hb_003186_020 0.0706148908 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
12 Hb_000317_510 0.0721289265 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
13 Hb_000373_080 0.0724028095 - - PREDICTED: serine decarboxylase [Jatropha curcas]
14 Hb_138435_010 0.0727662187 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
15 Hb_154580_010 0.0729494041 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
16 Hb_000205_130 0.0737795442 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_001377_110 0.0773310738 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
18 Hb_003096_060 0.0786294406 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
19 Hb_128548_010 0.0788989521 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000085_140 0.0790003126 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]

Gene co-expression network

sample Hb_002615_120 Hb_002615_120 Hb_001405_190 Hb_001405_190 Hb_002615_120--Hb_001405_190 Hb_008568_020 Hb_008568_020 Hb_002615_120--Hb_008568_020 Hb_032202_080 Hb_032202_080 Hb_002615_120--Hb_032202_080 Hb_000457_230 Hb_000457_230 Hb_002615_120--Hb_000457_230 Hb_000836_410 Hb_000836_410 Hb_002615_120--Hb_000836_410 Hb_000098_140 Hb_000098_140 Hb_002615_120--Hb_000098_140 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_007929_080 Hb_007929_080 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_154580_010 Hb_154580_010 Hb_008568_020--Hb_154580_010 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_032202_080--Hb_000457_230 Hb_001776_060 Hb_001776_060 Hb_032202_080--Hb_001776_060 Hb_138435_010 Hb_138435_010 Hb_032202_080--Hb_138435_010 Hb_032202_080--Hb_008568_020 Hb_032202_080--Hb_001405_190 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000457_230--Hb_003186_020 Hb_011972_020 Hb_011972_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_000390_230 Hb_000390_230 Hb_000836_410--Hb_000390_230 Hb_000230_090 Hb_000230_090 Hb_000836_410--Hb_000230_090 Hb_002701_150 Hb_002701_150 Hb_000836_410--Hb_002701_150 Hb_000836_410--Hb_000457_230 Hb_000243_210 Hb_000243_210 Hb_000836_410--Hb_000243_210 Hb_002067_030 Hb_002067_030 Hb_000098_140--Hb_002067_030 Hb_001636_050 Hb_001636_050 Hb_000098_140--Hb_001636_050 Hb_000098_140--Hb_032202_080 Hb_000098_140--Hb_000457_230 Hb_000023_320 Hb_000023_320 Hb_000098_140--Hb_000023_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67006 7.47268 11.9745 6.15322 7.09644 8.04676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.3947 4.15361 3.07232 5.21963 5.83698

CAGE analysis