Hb_000023_320

Information

Type -
Description -
Location Contig23: 527057-531999
Sequence    

Annotation

kegg
ID rcu:RCOM_0920750
description hypothetical protein
nr
ID XP_002515411.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID B9RNU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23966: 522505-526409 , PASA_asmbl_23967: 527011-532044
cDNA
(Sanger)
(ID:Location)		 039_F21.ab1: 527011-528939

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000023_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000926_010 0.059579475 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
3 Hb_001636_050 0.0668046878 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
4 Hb_000264_070 0.0679582606 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
5 Hb_001047_200 0.0748456599 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
6 Hb_000679_340 0.0779325862 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
7 Hb_143766_110 0.0787669556 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
8 Hb_004631_190 0.0794186304 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
9 Hb_005542_050 0.0796800263 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
10 Hb_001405_190 0.0806685477 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
11 Hb_002067_030 0.0810258397 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
12 Hb_002571_030 0.0815080303 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
13 Hb_128548_010 0.0816226185 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002739_130 0.0826465958 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Populus euphratica]
15 Hb_005288_080 0.0830563022 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002477_250 0.0831890014 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
17 Hb_007929_080 0.0834224337 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
18 Hb_000236_470 0.08392406 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
19 Hb_001674_040 0.0844060642 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
20 Hb_000098_140 0.0844297261 - - hypothetical protein JCGZ_04989 [Jatropha curcas]

Gene co-expression network

sample Hb_000023_320 Hb_000023_320 Hb_000926_010 Hb_000926_010 Hb_000023_320--Hb_000926_010 Hb_001636_050 Hb_001636_050 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000679_340 Hb_000679_340 Hb_000023_320--Hb_000679_340 Hb_143766_110 Hb_143766_110 Hb_000023_320--Hb_143766_110 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_007044_110 Hb_007044_110 Hb_001636_050--Hb_007044_110 Hb_002067_030 Hb_002067_030 Hb_001636_050--Hb_002067_030 Hb_004976_010 Hb_004976_010 Hb_001636_050--Hb_004976_010 Hb_000645_170 Hb_000645_170 Hb_001636_050--Hb_000645_170 Hb_000236_470 Hb_000236_470 Hb_001636_050--Hb_000236_470 Hb_055235_020 Hb_055235_020 Hb_001636_050--Hb_055235_020 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_001405_190 Hb_001405_190 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_000577_030 Hb_000577_030 Hb_001047_200--Hb_000577_030 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_001047_200--Hb_000236_470 Hb_000184_150 Hb_000184_150 Hb_001047_200--Hb_000184_150 Hb_001021_200 Hb_001021_200 Hb_001047_200--Hb_001021_200 Hb_001047_200--Hb_005542_050 Hb_022256_060 Hb_022256_060 Hb_000679_340--Hb_022256_060 Hb_000230_090 Hb_000230_090 Hb_000679_340--Hb_000230_090 Hb_005965_030 Hb_005965_030 Hb_000679_340--Hb_005965_030 Hb_003633_070 Hb_003633_070 Hb_000679_340--Hb_003633_070 Hb_008887_020 Hb_008887_020 Hb_000679_340--Hb_008887_020 Hb_000922_020 Hb_000922_020 Hb_000679_340--Hb_000922_020 Hb_143766_110--Hb_001405_190 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_007929_080 Hb_007929_080 Hb_143766_110--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38682 5.25673 5.19528 2.30491 4.26769 3.07487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8767 1.54389 1.30612 2.92081 2.37025

CAGE analysis