Hb_143766_110

Information

Type -
Description -
Location Contig143766: 79565-82963
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06660g
description asparaginyl-tRNA synthetase family protein
nr
ID XP_012076814.1
description PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
swissprot
ID Q9SW96
description Asparagine--tRNA ligase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=1 SV=1
trembl
ID A0A067KFL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07329 PE=3 SV=1
Gene Ontology
ID GO:0005737
description asparagine--trna cytoplasmic 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11560: 79588-83013
cDNA
(Sanger)
(ID:Location)		 025_I22.ab1: 81314-83013

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_110 0.0 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
2 Hb_001405_190 0.0588834169 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
3 Hb_000162_030 0.0658389796 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
4 Hb_000260_440 0.0699742621 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
5 Hb_000264_070 0.0702557021 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_010362_030 0.0702696914 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
7 Hb_007929_080 0.0704396119 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
8 Hb_001635_040 0.0734949068 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_000679_340 0.0746467474 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
10 Hb_008568_020 0.0757242757 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
11 Hb_000317_510 0.0758088969 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
12 Hb_008062_050 0.0759827221 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
13 Hb_004631_190 0.0775960503 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
14 Hb_000023_320 0.0787669556 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000230_090 0.0789018691 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
16 Hb_032264_060 0.0790189772 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
17 Hb_000086_500 0.0793442935 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_003638_090 0.0804669851 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
19 Hb_002615_120 0.0818204705 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
20 Hb_008247_020 0.0830299748 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_143766_110 Hb_143766_110 Hb_001405_190 Hb_001405_190 Hb_143766_110--Hb_001405_190 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_007929_080 Hb_007929_080 Hb_143766_110--Hb_007929_080 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_001405_190--Hb_007929_080 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_001405_190--Hb_010362_030 Hb_001635_040 Hb_001635_040 Hb_000162_030--Hb_001635_040 Hb_001147_110 Hb_001147_110 Hb_000162_030--Hb_001147_110 Hb_001268_280 Hb_001268_280 Hb_000162_030--Hb_001268_280 Hb_008568_020 Hb_008568_020 Hb_000162_030--Hb_008568_020 Hb_004357_020 Hb_004357_020 Hb_000162_030--Hb_004357_020 Hb_002276_240 Hb_002276_240 Hb_000162_030--Hb_002276_240 Hb_000777_050 Hb_000777_050 Hb_000260_440--Hb_000777_050 Hb_014361_150 Hb_014361_150 Hb_000260_440--Hb_014361_150 Hb_000291_060 Hb_000291_060 Hb_000260_440--Hb_000291_060 Hb_007765_080 Hb_007765_080 Hb_000260_440--Hb_007765_080 Hb_000260_440--Hb_001635_040 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_002477_250 Hb_002477_250 Hb_000264_070--Hb_002477_250 Hb_000023_320 Hb_000023_320 Hb_000264_070--Hb_000023_320 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.133 156.934 180 87.1101 135.807 133.291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.654 46.2419 81.5695 83.5788 87.443

CAGE analysis