Hb_000567_190

Information

Type -
Description -
Location Contig567: 219312-228240
Sequence    

Annotation

kegg
ID pmum:103324947
description protein SCAR1
nr
ID XP_012091772.1
description PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
swissprot
ID Q6AWX6
description Protein SCAR1 OS=Arabidopsis thaliana GN=SCAR1 PE=1 SV=1
trembl
ID A0A067JM69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21566 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49125: 219335-222846 , PASA_asmbl_49126: 225137-225307 , PASA_asmbl_49127: 223246-226116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_190 0.0 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
2 Hb_000879_180 0.0662959257 - - XPA-binding protein, putative [Ricinus communis]
3 Hb_001635_040 0.0747766524 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
4 Hb_000635_040 0.0759219262 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
5 Hb_010362_030 0.0770123108 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
6 Hb_000130_420 0.0780214082 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
7 Hb_001761_120 0.0805623053 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
8 Hb_002267_140 0.0813613713 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
9 Hb_000214_050 0.0817605734 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
10 Hb_002326_040 0.0838899685 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
11 Hb_004912_030 0.0844787731 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
12 Hb_138596_010 0.0850696134 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
13 Hb_001195_530 0.0855863895 - - conserved hypothetical protein [Ricinus communis]
14 Hb_030827_020 0.0858543449 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
15 Hb_008226_090 0.0866972029 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
16 Hb_001804_110 0.0871951287 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
17 Hb_000239_060 0.0883024468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007290_030 0.0884259739 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
19 Hb_003640_040 0.0886798477 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
20 Hb_000317_510 0.0888588154 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_190 Hb_000567_190 Hb_000879_180 Hb_000879_180 Hb_000567_190--Hb_000879_180 Hb_001635_040 Hb_001635_040 Hb_000567_190--Hb_001635_040 Hb_000635_040 Hb_000635_040 Hb_000567_190--Hb_000635_040 Hb_010362_030 Hb_010362_030 Hb_000567_190--Hb_010362_030 Hb_000130_420 Hb_000130_420 Hb_000567_190--Hb_000130_420 Hb_001761_120 Hb_001761_120 Hb_000567_190--Hb_001761_120 Hb_000096_120 Hb_000096_120 Hb_000879_180--Hb_000096_120 Hb_010407_050 Hb_010407_050 Hb_000879_180--Hb_010407_050 Hb_001377_310 Hb_001377_310 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_004096_180 Hb_004096_180 Hb_000879_180--Hb_004096_180 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_000162_030 Hb_000162_030 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_000777_050 Hb_000777_050 Hb_001635_040--Hb_000777_050 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010 Hb_007800_020 Hb_007800_020 Hb_000635_040--Hb_007800_020 Hb_000635_040--Hb_000130_420 Hb_000046_570 Hb_000046_570 Hb_000635_040--Hb_000046_570 Hb_000362_170 Hb_000362_170 Hb_000635_040--Hb_000362_170 Hb_008226_090 Hb_008226_090 Hb_000635_040--Hb_008226_090 Hb_001405_190 Hb_001405_190 Hb_010362_030--Hb_001405_190 Hb_010998_040 Hb_010998_040 Hb_010362_030--Hb_010998_040 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_001140_030 Hb_001140_030 Hb_010362_030--Hb_001140_030 Hb_000139_190 Hb_000139_190 Hb_010362_030--Hb_000139_190 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000130_420--Hb_000362_170 Hb_011972_020 Hb_011972_020 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040 Hb_170416_010 Hb_170416_010 Hb_001761_120--Hb_170416_010 Hb_003531_080 Hb_003531_080 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_000103_340 Hb_000103_340 Hb_001761_120--Hb_000103_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8058 30.3422 35.1811 29.309 25.9601 28.1882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7977 17.1933 24.3842 13.9099 20.1019

CAGE analysis