Hb_010998_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig10998: 69748-75153
Sequence    

Annotation

kegg
ID rcu:RCOM_0915890
description myb3r3, putative
nr
ID XP_002532327.1
description myb3r3, putative [Ricinus communis]
swissprot
ID Q9S7G7
description Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1
trembl
ID B9T258
description Myb3r3, putative OS=Ricinus communis GN=RCOM_0915890 PE=4 SV=1
Gene Ontology
ID GO:0003677
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02942: 68691-72001 , PASA_asmbl_02943: 72613-74757 , PASA_asmbl_02944: 72440-75042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010998_040 0.0 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
2 Hb_001804_110 0.0605768739 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
3 Hb_001140_030 0.062716695 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
4 Hb_000959_230 0.0661524804 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
5 Hb_010362_030 0.067693901 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
6 Hb_000139_190 0.0763425878 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
7 Hb_000130_420 0.0786981829 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
8 Hb_001405_190 0.0807109624 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
9 Hb_004648_090 0.0808509809 - - peroxisomal biogenesis factor, putative [Ricinus communis]
10 Hb_001952_120 0.0867564599 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
11 Hb_001776_060 0.0868330732 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
12 Hb_000525_100 0.0879911874 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
13 Hb_001636_050 0.0884525949 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
14 Hb_001005_020 0.0886223392 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
15 Hb_032264_060 0.0894497999 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
16 Hb_003746_030 0.0894774652 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
17 Hb_000264_070 0.0894998783 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
18 Hb_000723_110 0.0902892904 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
19 Hb_003682_030 0.091398932 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
20 Hb_000809_160 0.0942406368 - - hypothetical protein JCGZ_12355 [Jatropha curcas]

Gene co-expression network

sample Hb_010998_040 Hb_010998_040 Hb_001804_110 Hb_001804_110 Hb_010998_040--Hb_001804_110 Hb_001140_030 Hb_001140_030 Hb_010998_040--Hb_001140_030 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_001804_110--Hb_000959_230 Hb_003746_030 Hb_003746_030 Hb_001804_110--Hb_003746_030 Hb_002054_050 Hb_002054_050 Hb_001804_110--Hb_002054_050 Hb_006688_050 Hb_006688_050 Hb_001804_110--Hb_006688_050 Hb_001804_110--Hb_001140_030 Hb_001952_120 Hb_001952_120 Hb_001140_030--Hb_001952_120 Hb_032264_060 Hb_032264_060 Hb_001140_030--Hb_032264_060 Hb_004631_190 Hb_004631_190 Hb_001140_030--Hb_004631_190 Hb_005965_030 Hb_005965_030 Hb_001140_030--Hb_005965_030 Hb_001405_190 Hb_001405_190 Hb_001140_030--Hb_001405_190 Hb_000959_230--Hb_002054_050 Hb_043792_010 Hb_043792_010 Hb_000959_230--Hb_043792_010 Hb_008921_010 Hb_008921_010 Hb_000959_230--Hb_008921_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_010362_030--Hb_001405_190 Hb_143766_110 Hb_143766_110 Hb_010362_030--Hb_143766_110 Hb_000567_190 Hb_000567_190 Hb_010362_030--Hb_000567_190 Hb_010362_030--Hb_001140_030 Hb_010362_030--Hb_000139_190 Hb_027073_030 Hb_027073_030 Hb_000139_190--Hb_027073_030 Hb_039605_010 Hb_039605_010 Hb_000139_190--Hb_039605_010 Hb_000139_190--Hb_032264_060 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000362_170 Hb_000362_170 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_011972_020 Hb_011972_020 Hb_000130_420--Hb_011972_020 Hb_002014_040 Hb_002014_040 Hb_000130_420--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_000130_420--Hb_000238_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72649 10.2251 12.4227 6.48836 9.97682 5.72296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37414 5.35735 4.3871 3.86931 4.99094

CAGE analysis