Hb_002054_050

Information

Type -
Description -
Location Contig2054: 90353-94023
Sequence    

Annotation

kegg
ID rcu:RCOM_0271970
description hypothetical protein
nr
ID XP_012081187.1
description PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17026 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21195: 90295-93966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002054_050 0.0 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
2 Hb_008921_010 0.0566998519 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
3 Hb_000959_230 0.0637621822 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
4 Hb_000317_510 0.0672801871 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
5 Hb_005463_130 0.0704543775 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
6 Hb_001005_030 0.0715960385 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
7 Hb_001501_080 0.0716497801 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
8 Hb_001804_110 0.0729383361 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
9 Hb_000362_170 0.0760509002 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_001405_190 0.0780330532 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
11 Hb_000751_030 0.0794251791 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
12 Hb_000373_080 0.0809785102 - - PREDICTED: serine decarboxylase [Jatropha curcas]
13 Hb_002326_110 0.0834429019 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
14 Hb_001486_170 0.0839094888 - - PREDICTED: syntaxin-132 [Jatropha curcas]
15 Hb_000136_110 0.0841373008 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
16 Hb_000879_180 0.0841626186 - - XPA-binding protein, putative [Ricinus communis]
17 Hb_002615_120 0.0844108769 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
18 Hb_000130_420 0.0845312722 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
19 Hb_010407_050 0.0847259734 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
20 Hb_000737_030 0.0854195489 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002054_050 Hb_002054_050 Hb_008921_010 Hb_008921_010 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_005463_130 Hb_005463_130 Hb_002054_050--Hb_005463_130 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_001501_080 Hb_001501_080 Hb_002054_050--Hb_001501_080 Hb_008921_010--Hb_000959_230 Hb_002942_210 Hb_002942_210 Hb_008921_010--Hb_002942_210 Hb_000589_190 Hb_000589_190 Hb_008921_010--Hb_000589_190 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010 Hb_000959_230--Hb_001804_110 Hb_010998_040 Hb_010998_040 Hb_000959_230--Hb_010998_040 Hb_043792_010 Hb_043792_010 Hb_000959_230--Hb_043792_010 Hb_007007_040 Hb_007007_040 Hb_000959_230--Hb_007007_040 Hb_103747_020 Hb_103747_020 Hb_000317_510--Hb_103747_020 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_000317_510--Hb_001005_030 Hb_001486_170 Hb_001486_170 Hb_005463_130--Hb_001486_170 Hb_005463_130--Hb_001501_080 Hb_013726_080 Hb_013726_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_005463_130--Hb_008921_010 Hb_001005_030--Hb_000362_170 Hb_001005_030--Hb_000373_080 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_003186_020 Hb_003186_020 Hb_001005_030--Hb_003186_020 Hb_001501_080--Hb_000751_030 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4809 12.5789 27.0346 17.6911 19.9645 14.8794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42801 8.54475 10.955 9.79855 12.0052

CAGE analysis