Hb_005463_130

Information

Type -
Description -
Location Contig5463: 77204-82813
Sequence    

Annotation

kegg
ID vvi:100252372
description polygalacturonate 4-alpha-galacturonosyltransferase
nr
ID XP_012083520.1
description PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
swissprot
ID Q9LE59
description Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1
trembl
ID A0A067K8Z3
description Hexosyltransferase OS=Jatropha curcas GN=JCGZ_14486 PE=3 SV=1
Gene Ontology
ID GO:0000139
description polygalacturonate 4-alpha-galacturonosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48014: 77107-82962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005463_130 0.0 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
2 Hb_001486_170 0.0696645374 - - PREDICTED: syntaxin-132 [Jatropha curcas]
3 Hb_002054_050 0.0704543775 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
4 Hb_001501_080 0.0765149871 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
5 Hb_013726_080 0.0866608475 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
6 Hb_000751_030 0.0908627691 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
7 Hb_008921_010 0.0952570153 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
8 Hb_002836_140 0.0989949522 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
9 Hb_000915_080 0.1015384445 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
10 Hb_000136_110 0.1071435361 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
11 Hb_000959_230 0.1076897404 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_027472_120 0.1090770076 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_044662_060 0.1092242099 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
14 Hb_000556_150 0.1107093643 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
15 Hb_002498_140 0.1112266562 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
16 Hb_000487_180 0.1112883048 - - PREDICTED: post-GPI attachment to proteins factor 3 isoform X1 [Jatropha curcas]
17 Hb_002351_030 0.1118100749 - - catalytic, putative [Ricinus communis]
18 Hb_000414_050 0.1122612549 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
19 Hb_004007_220 0.1136994823 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
20 Hb_058999_030 0.1141840045 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005463_130 Hb_005463_130 Hb_001486_170 Hb_001486_170 Hb_005463_130--Hb_001486_170 Hb_002054_050 Hb_002054_050 Hb_005463_130--Hb_002054_050 Hb_001501_080 Hb_001501_080 Hb_005463_130--Hb_001501_080 Hb_013726_080 Hb_013726_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_002836_140 Hb_002836_140 Hb_001486_170--Hb_002836_140 Hb_001486_170--Hb_013726_080 Hb_001486_170--Hb_002054_050 Hb_000915_080 Hb_000915_080 Hb_001486_170--Hb_000915_080 Hb_008556_030 Hb_008556_030 Hb_001486_170--Hb_008556_030 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_000317_510 Hb_000317_510 Hb_002054_050--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_002054_050--Hb_001005_030 Hb_002054_050--Hb_001501_080 Hb_001501_080--Hb_000751_030 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_007007_040 Hb_007007_040 Hb_001501_080--Hb_007007_040 Hb_003760_030 Hb_003760_030 Hb_001501_080--Hb_003760_030 Hb_002539_110 Hb_002539_110 Hb_013726_080--Hb_002539_110 Hb_013726_080--Hb_000915_080 Hb_013726_080--Hb_002054_050 Hb_003430_090 Hb_003430_090 Hb_013726_080--Hb_003430_090 Hb_000751_030--Hb_000392_230 Hb_000751_030--Hb_007007_040 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_008921_010--Hb_000959_230 Hb_002942_210 Hb_002942_210 Hb_008921_010--Hb_002942_210 Hb_000589_190 Hb_000589_190 Hb_008921_010--Hb_000589_190 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_139002_010 Hb_139002_010 Hb_008921_010--Hb_139002_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8031 5.69412 19.2973 13.9179 17.8448 11.1928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.56808 6.40362 9.7443 6.04288 8.17149

CAGE analysis