Hb_007007_040

Information

Type desease resistance
Description Gene Name: ArsA_ATPase
Location Contig7007: 20670-24942
Sequence    

Annotation

kegg
ID rcu:RCOM_1613490
description arsenical pump-driving atpase, putative (EC:3.6.3.16)
nr
ID XP_002511778.1
description arsenical pump-driving atpase, putative [Ricinus communis]
swissprot
ID Q16MG9
description ATPase ASNA1 homolog OS=Aedes aegypti GN=AAEL011136 PE=3 SV=1
trembl
ID B9RDI9
description ATPase ASNA1 homolog OS=Ricinus communis GN=RCOM_1613490 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atpase asna1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54825: 20667-24875 , PASA_asmbl_54826: 20761-22562
cDNA
(Sanger)
(ID:Location)		 019_N10.ab1: 20667-22301 , 050_F02.ab1: 20667-23454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007007_040 0.0 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
2 Hb_003119_090 0.0641521584 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
3 Hb_000019_190 0.065345409 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
4 Hb_000751_030 0.0686203416 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
5 Hb_023313_040 0.0693629218 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
6 Hb_003760_030 0.0714037873 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
7 Hb_000006_010 0.073237255 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002272_050 0.0733200025 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
9 Hb_000959_230 0.0740131677 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
10 Hb_000847_080 0.076612903 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
11 Hb_006615_050 0.0773612693 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
12 Hb_001002_060 0.0782676615 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
13 Hb_001501_080 0.0790972384 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
14 Hb_000737_030 0.0808449372 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
15 Hb_000058_130 0.0818207917 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
16 Hb_001804_110 0.0820927686 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
17 Hb_002909_040 0.0838122098 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
18 Hb_000879_180 0.083902782 - - XPA-binding protein, putative [Ricinus communis]
19 Hb_171900_090 0.0843417049 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000336_210 0.0845486586 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007007_040 Hb_007007_040 Hb_003119_090 Hb_003119_090 Hb_007007_040--Hb_003119_090 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_023313_040 Hb_023313_040 Hb_007007_040--Hb_023313_040 Hb_003760_030 Hb_003760_030 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_000019_190--Hb_023313_040 Hb_002014_010 Hb_002014_010 Hb_000019_190--Hb_002014_010 Hb_001227_120 Hb_001227_120 Hb_000019_190--Hb_001227_120 Hb_007248_030 Hb_007248_030 Hb_000019_190--Hb_007248_030 Hb_163175_010 Hb_163175_010 Hb_000019_190--Hb_163175_010 Hb_000751_030--Hb_001501_080 Hb_000392_230 Hb_000392_230 Hb_000751_030--Hb_000392_230 Hb_000776_100 Hb_000776_100 Hb_000751_030--Hb_000776_100 Hb_011618_050 Hb_011618_050 Hb_000751_030--Hb_011618_050 Hb_000414_050 Hb_000414_050 Hb_000751_030--Hb_000414_050 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_023313_040--Hb_000006_010 Hb_065755_030 Hb_065755_030 Hb_003760_030--Hb_065755_030 Hb_003760_030--Hb_000751_030 Hb_003760_030--Hb_001501_080 Hb_002485_030 Hb_002485_030 Hb_003760_030--Hb_002485_030 Hb_001009_320 Hb_001009_320 Hb_000006_010--Hb_001009_320 Hb_000139_260 Hb_000139_260 Hb_000006_010--Hb_000139_260 Hb_000006_010--Hb_000803_270 Hb_000522_170 Hb_000522_170 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9488 27.8129 64.2062 46.6162 41.2742 33.0745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.3101 34.9039 20.1978 28.0022 28.392

CAGE analysis