Hb_002485_030

Information

Type -
Description -
Location Contig2485: 51546-61864
Sequence    

Annotation

kegg
ID gmx:100809120
description 2-dehydro-3-deoxyphosphooctonate aldolase-like
nr
ID XP_012072652.1
description PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
swissprot
ID O50044
description 2-dehydro-3-deoxyphosphooctonate aldolase OS=Pisum sativum GN=KDSA PE=2 SV=1
trembl
ID A0A067KNL7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06713 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 2-dehydro-3-deoxyphosphooctonate aldolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25855: 51768-51907 , PASA_asmbl_25856: 57411-57792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002485_030 0.0 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
2 Hb_001085_260 0.0711467494 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
3 Hb_003760_030 0.081815255 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
4 Hb_003119_090 0.0878001016 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
5 Hb_006816_100 0.0949413376 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
6 Hb_000103_120 0.10053263 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
7 Hb_000494_080 0.1012017004 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
8 Hb_001501_080 0.1040247051 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
9 Hb_003943_050 0.1062846838 - - phosphoglucomutase, putative [Ricinus communis]
10 Hb_002284_210 0.1080958717 - - PREDICTED: protein canopy-1 [Jatropha curcas]
11 Hb_002054_050 0.1101922819 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_026234_010 0.1102160364 - - choline monooxygenase, putative [Ricinus communis]
13 Hb_000751_030 0.1117215911 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
14 Hb_000239_060 0.1119062556 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001486_170 0.1132525699 - - PREDICTED: syntaxin-132 [Jatropha curcas]
16 Hb_007951_040 0.113490822 - - signal peptidase family protein [Populus trichocarpa]
17 Hb_002351_030 0.1150676058 - - catalytic, putative [Ricinus communis]
18 Hb_016347_020 0.1164808157 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
19 Hb_002326_110 0.1180627614 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
20 Hb_003688_040 0.1181740652 - - -

Gene co-expression network

sample Hb_002485_030 Hb_002485_030 Hb_001085_260 Hb_001085_260 Hb_002485_030--Hb_001085_260 Hb_003760_030 Hb_003760_030 Hb_002485_030--Hb_003760_030 Hb_003119_090 Hb_003119_090 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_001085_260--Hb_003119_090 Hb_003760_030--Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003760_030--Hb_007007_040 Hb_065755_030 Hb_065755_030 Hb_003760_030--Hb_065755_030 Hb_000751_030 Hb_000751_030 Hb_003760_030--Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_003760_030--Hb_001501_080 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_001277_280 Hb_001277_280 Hb_006816_100--Hb_001277_280 Hb_006816_100--Hb_002284_210 Hb_006816_100--Hb_003760_030 Hb_001517_050 Hb_001517_050 Hb_006816_100--Hb_001517_050 Hb_006816_100--Hb_065755_030 Hb_004324_390 Hb_004324_390 Hb_000103_120--Hb_004324_390 Hb_000154_050 Hb_000154_050 Hb_000103_120--Hb_000154_050 Hb_000331_140 Hb_000331_140 Hb_000103_120--Hb_000331_140 Hb_002783_220 Hb_002783_220 Hb_000103_120--Hb_002783_220 Hb_004032_370 Hb_004032_370 Hb_000103_120--Hb_004032_370 Hb_000635_040 Hb_000635_040 Hb_000494_080--Hb_000635_040 Hb_003929_170 Hb_003929_170 Hb_000494_080--Hb_003929_170 Hb_005895_010 Hb_005895_010 Hb_000494_080--Hb_005895_010 Hb_001087_030 Hb_001087_030 Hb_000494_080--Hb_001087_030 Hb_002876_320 Hb_002876_320 Hb_000494_080--Hb_002876_320 Hb_002965_040 Hb_002965_040 Hb_000494_080--Hb_002965_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.4914 7.55717 29.5591 19.8526 10.2662 15.8643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92464 7.68596 7.97046 7.74413 8.31152

CAGE analysis