Hb_003119_090

Information

Type -
Description -
Location Contig3119: 49792-52022
Sequence    

Annotation

kegg
ID cic:CICLE_v10029087mg
description hypothetical protein
nr
ID XP_012069158.1
description PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
swissprot
ID P93211
description 14-3-3 protein 6 OS=Solanum lycopersicum GN=TFT6 PE=2 SV=2
trembl
ID A0A067L8U9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24924 PE=3 SV=1
Gene Ontology
ID GO:0019904
description 14-3-3-like protein 16r

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32977: 49786-51997
cDNA
(Sanger)
(ID:Location)		 018_I14.ab1: 50560-51994 , 045_D12.ab1: 50223-51991 , 047_J03.ab1: 50244-51991

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_090 0.0 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
2 Hb_007007_040 0.0641521584 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_003943_050 0.0679429266 - - phosphoglucomutase, putative [Ricinus communis]
4 Hb_003760_030 0.0709197042 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
5 Hb_023313_040 0.0800646704 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
6 Hb_001501_080 0.0806522941 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
7 Hb_030982_030 0.0814939929 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
8 Hb_000963_040 0.0821320695 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
9 Hb_001227_130 0.0823119559 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
10 Hb_000751_030 0.0833567243 - - Vesicle transport protein GOT1B, putative [Ricinus communis]
11 Hb_002326_110 0.083653841 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
12 Hb_002272_050 0.083886505 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
13 Hb_000879_180 0.0863425963 - - XPA-binding protein, putative [Ricinus communis]
14 Hb_001002_060 0.0868421328 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
15 Hb_002054_050 0.0872388554 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
16 Hb_016347_020 0.0876456047 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
17 Hb_002909_040 0.0877555992 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
18 Hb_002485_030 0.0878001016 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
19 Hb_000236_490 0.0885396681 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
20 Hb_002351_030 0.08931781 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_003119_090 Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_023313_040 Hb_023313_040 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_000019_190 Hb_000019_190 Hb_007007_040--Hb_000019_190 Hb_000751_030 Hb_000751_030 Hb_007007_040--Hb_000751_030 Hb_007007_040--Hb_023313_040 Hb_007007_040--Hb_003760_030 Hb_000006_010 Hb_000006_010 Hb_007007_040--Hb_000006_010 Hb_000007_390 Hb_000007_390 Hb_003943_050--Hb_000007_390 Hb_000270_680 Hb_000270_680 Hb_003943_050--Hb_000270_680 Hb_001186_090 Hb_001186_090 Hb_003943_050--Hb_001186_090 Hb_003943_050--Hb_007007_040 Hb_000737_030 Hb_000737_030 Hb_003943_050--Hb_000737_030 Hb_065755_030 Hb_065755_030 Hb_003760_030--Hb_065755_030 Hb_003760_030--Hb_000751_030 Hb_003760_030--Hb_001501_080 Hb_002485_030 Hb_002485_030 Hb_003760_030--Hb_002485_030 Hb_023313_040--Hb_000019_190 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_023313_040--Hb_000006_010 Hb_001501_080--Hb_000751_030 Hb_002054_050 Hb_002054_050 Hb_001501_080--Hb_002054_050 Hb_005463_130 Hb_005463_130 Hb_001501_080--Hb_005463_130 Hb_000392_230 Hb_000392_230 Hb_001501_080--Hb_000392_230 Hb_001501_080--Hb_007007_040 Hb_000963_040 Hb_000963_040 Hb_030982_030--Hb_000963_040 Hb_016347_020 Hb_016347_020 Hb_030982_030--Hb_016347_020 Hb_001227_130 Hb_001227_130 Hb_030982_030--Hb_001227_130 Hb_000600_060 Hb_000600_060 Hb_030982_030--Hb_000600_060 Hb_004324_400 Hb_004324_400 Hb_030982_030--Hb_004324_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.1691 50.2934 146.778 109.678 77.1162 63.6978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.3273 57.0141 49.0244 65.7483 44.9089

CAGE analysis