Hb_016347_020

Information

Type -
Description -
Location Contig16347: 17190-20420
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00630g
description POPTRDRAFT_578099; hypothetical protein
nr
ID XP_011026599.1
description PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
swissprot
ID Q8L493
description D-amino-acid transaminase, chloroplastic OS=Arabidopsis thaliana GN=DAAT PE=1 SV=1
trembl
ID A0A067KGW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07774 PE=3 SV=1
Gene Ontology
ID GO:0009570
description d-amino-acid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14922: 17203-17519 , PASA_asmbl_14923: 17581-20340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016347_020 0.0 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]
2 Hb_000684_080 0.0744691623 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
3 Hb_000963_040 0.0827085188 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
4 Hb_000330_060 0.0829941923 - - PREDICTED: adenosine kinase [Jatropha curcas]
5 Hb_001002_060 0.0838637474 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
6 Hb_004096_060 0.084755472 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
7 Hb_003119_090 0.0876456047 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
8 Hb_030736_060 0.0896051323 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
9 Hb_121089_030 0.0901266492 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
10 Hb_000261_210 0.0914162605 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_000236_490 0.0920381755 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
12 Hb_000737_030 0.092175349 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
13 Hb_002311_380 0.0940977833 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
14 Hb_002326_110 0.0943658006 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
15 Hb_005064_010 0.095406427 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
16 Hb_030982_010 0.0967683965 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000373_080 0.096998309 - - PREDICTED: serine decarboxylase [Jatropha curcas]
18 Hb_161568_010 0.0975112193 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_030982_030 0.098135694 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
20 Hb_033642_040 0.0982267272 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_016347_020 Hb_016347_020 Hb_000684_080 Hb_000684_080 Hb_016347_020--Hb_000684_080 Hb_000963_040 Hb_000963_040 Hb_016347_020--Hb_000963_040 Hb_000330_060 Hb_000330_060 Hb_016347_020--Hb_000330_060 Hb_001002_060 Hb_001002_060 Hb_016347_020--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_016347_020--Hb_004096_060 Hb_003119_090 Hb_003119_090 Hb_016347_020--Hb_003119_090 Hb_121089_030 Hb_121089_030 Hb_000684_080--Hb_121089_030 Hb_000317_510 Hb_000317_510 Hb_000684_080--Hb_000317_510 Hb_000373_080 Hb_000373_080 Hb_000684_080--Hb_000373_080 Hb_030736_060 Hb_030736_060 Hb_000684_080--Hb_030736_060 Hb_002784_030 Hb_002784_030 Hb_000684_080--Hb_002784_030 Hb_030982_030 Hb_030982_030 Hb_000963_040--Hb_030982_030 Hb_023313_040 Hb_023313_040 Hb_000963_040--Hb_023313_040 Hb_000600_060 Hb_000600_060 Hb_000963_040--Hb_000600_060 Hb_000963_040--Hb_003119_090 Hb_001227_130 Hb_001227_130 Hb_000963_040--Hb_001227_130 Hb_000116_030 Hb_000116_030 Hb_000330_060--Hb_000116_030 Hb_000215_300 Hb_000215_300 Hb_000330_060--Hb_000215_300 Hb_001579_330 Hb_001579_330 Hb_000330_060--Hb_001579_330 Hb_002686_080 Hb_002686_080 Hb_000330_060--Hb_002686_080 Hb_000238_040 Hb_000238_040 Hb_000330_060--Hb_000238_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_025668_010 Hb_025668_010 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_004032_370 Hb_004032_370 Hb_004096_060--Hb_004032_370 Hb_033642_040 Hb_033642_040 Hb_004096_060--Hb_033642_040 Hb_004096_060--Hb_025668_010 Hb_000724_020 Hb_000724_020 Hb_004096_060--Hb_000724_020 Hb_004096_060--Hb_001002_060 Hb_002326_110 Hb_002326_110 Hb_004096_060--Hb_002326_110 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_003119_090--Hb_030982_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1006 7.63154 16.7271 16.2489 7.81842 7.49311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.01457 4.27171 5.37786 10.5042 7.19594

CAGE analysis