Hb_001579_330

Information

Type -
Description -
Location Contig1579: 222841-225017
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008184mg
description hypothetical protein
nr
ID XP_012085420.1
description PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
swissprot
ID F4IDI6
description Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana GN=BRG2 PE=1 SV=1
trembl
ID A0A067JRT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17770 PE=4 SV=1
Gene Ontology
ID GO:0005634
description boi-related e3 ubiquitin-protein ligase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13848: 222859-228316 , PASA_asmbl_13849: 222875-228760 , PASA_asmbl_13851: 223607-223771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_330 0.0 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
2 Hb_000238_040 0.0364345777 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
3 Hb_002811_270 0.0723053723 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
4 Hb_011972_020 0.0732776015 - - protein binding protein, putative [Ricinus communis]
5 Hb_000130_420 0.0782233913 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_001257_030 0.0798661005 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
7 Hb_000116_030 0.0803167484 - - PREDICTED: protein GRIP [Jatropha curcas]
8 Hb_000510_360 0.0813848895 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
9 Hb_000085_170 0.0839202216 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
10 Hb_007290_030 0.0849164131 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
11 Hb_000227_270 0.085002511 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
12 Hb_000847_080 0.0850103299 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
13 Hb_000282_090 0.0854934775 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
14 Hb_002326_110 0.086148484 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
15 Hb_000214_050 0.0863328083 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
16 Hb_043792_010 0.0867295051 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
17 Hb_000352_350 0.0867316702 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
18 Hb_170416_010 0.0878939837 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
19 Hb_000330_060 0.0879350158 - - PREDICTED: adenosine kinase [Jatropha curcas]
20 Hb_002326_040 0.0890436214 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]

Gene co-expression network

sample Hb_001579_330 Hb_001579_330 Hb_000238_040 Hb_000238_040 Hb_001579_330--Hb_000238_040 Hb_002811_270 Hb_002811_270 Hb_001579_330--Hb_002811_270 Hb_011972_020 Hb_011972_020 Hb_001579_330--Hb_011972_020 Hb_000130_420 Hb_000130_420 Hb_001579_330--Hb_000130_420 Hb_001257_030 Hb_001257_030 Hb_001579_330--Hb_001257_030 Hb_000116_030 Hb_000116_030 Hb_001579_330--Hb_000116_030 Hb_000238_040--Hb_011972_020 Hb_000238_040--Hb_000116_030 Hb_000238_040--Hb_002811_270 Hb_000238_040--Hb_000130_420 Hb_000457_230 Hb_000457_230 Hb_000238_040--Hb_000457_230 Hb_000214_050 Hb_000214_050 Hb_002811_270--Hb_000214_050 Hb_002326_040 Hb_002326_040 Hb_002811_270--Hb_002326_040 Hb_001518_080 Hb_001518_080 Hb_002811_270--Hb_001518_080 Hb_012506_030 Hb_012506_030 Hb_002811_270--Hb_012506_030 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_004912_030 Hb_004912_030 Hb_000130_420--Hb_004912_030 Hb_000362_170 Hb_000362_170 Hb_000130_420--Hb_000362_170 Hb_000635_040 Hb_000635_040 Hb_000130_420--Hb_000635_040 Hb_000130_420--Hb_011972_020 Hb_000130_420--Hb_002014_040 Hb_005214_140 Hb_005214_140 Hb_001257_030--Hb_005214_140 Hb_000739_180 Hb_000739_180 Hb_001257_030--Hb_000739_180 Hb_001863_360 Hb_001863_360 Hb_001257_030--Hb_001863_360 Hb_000856_040 Hb_000856_040 Hb_001257_030--Hb_000856_040 Hb_001817_170 Hb_001817_170 Hb_001257_030--Hb_001817_170 Hb_010407_060 Hb_010407_060 Hb_001257_030--Hb_010407_060 Hb_001241_010 Hb_001241_010 Hb_000116_030--Hb_001241_010 Hb_001584_350 Hb_001584_350 Hb_000116_030--Hb_001584_350 Hb_000330_060 Hb_000330_060 Hb_000116_030--Hb_000330_060 Hb_002889_010 Hb_002889_010 Hb_000116_030--Hb_002889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6906 21.298 28.3506 20.7859 18.2292 10.3189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8542 10.2395 12.2251 16.1186 19.1556

CAGE analysis