Hb_002014_040

Information

Type -
Description -
Location Contig2014: 63926-70484
Sequence    

Annotation

kegg
ID rcu:RCOM_1052690
description site-1 protease, putative (EC:3.4.21.62)
nr
ID XP_002514296.1
description site-1 protease, putative [Ricinus communis]
swissprot
ID Q0WUG6
description Subtilisin-like protease SBT6.1 OS=Arabidopsis thaliana GN=SBT6.1 PE=1 SV=1
trembl
ID B9RKQ2
description Site-1 protease, putative OS=Ricinus communis GN=RCOM_1052690 PE=4 SV=1
Gene Ontology
ID GO:0005794
description membrane-bound transcription factor site-1 protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20456: 64200-68557 , PASA_asmbl_20457: 68592-70455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002014_040 0.0 - - site-1 protease, putative [Ricinus communis]
2 Hb_000362_170 0.0481211951 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
3 Hb_103747_020 0.0516399335 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
4 Hb_011972_020 0.0600105602 - - protein binding protein, putative [Ricinus communis]
5 Hb_010272_010 0.060884774 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]
6 Hb_008226_090 0.0649329433 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
7 Hb_005895_010 0.0663479183 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
8 Hb_055235_020 0.0664879084 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
9 Hb_002942_210 0.0690484311 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
10 Hb_003186_020 0.0694332761 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
11 Hb_000336_020 0.0698459053 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
12 Hb_000317_510 0.070786246 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
13 Hb_000130_420 0.0717568862 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
14 Hb_000139_260 0.0725021578 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
15 Hb_098209_010 0.0732533898 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
16 Hb_000640_070 0.0734145127 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
17 Hb_003436_020 0.0736106012 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
18 Hb_000836_410 0.0742620177 - - sec10, putative [Ricinus communis]
19 Hb_008397_010 0.0745718937 - - PREDICTED: uncharacterized protein LOC105640192 isoform X2 [Jatropha curcas]
20 Hb_001318_070 0.0753132775 transcription factor TF Family: SBP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002014_040 Hb_002014_040 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_001005_030 Hb_001005_030 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000214_050 Hb_000214_050 Hb_000362_170--Hb_000214_050 Hb_000373_080 Hb_000373_080 Hb_000362_170--Hb_000373_080 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_103747_020--Hb_008226_090 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_000529_060 Hb_000529_060 Hb_011972_020--Hb_000529_060 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_005946_210 Hb_005946_210 Hb_010272_010--Hb_005946_210 Hb_012215_010 Hb_012215_010 Hb_010272_010--Hb_012215_010 Hb_002539_110 Hb_002539_110 Hb_010272_010--Hb_002539_110 Hb_000640_070 Hb_000640_070 Hb_010272_010--Hb_000640_070 Hb_000664_110 Hb_000664_110 Hb_010272_010--Hb_000664_110 Hb_008226_090--Hb_005723_020 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_001135_120 Hb_001135_120 Hb_008226_090--Hb_001135_120 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_005895_010--Hb_001002_060 Hb_005895_010--Hb_000640_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30083 8.07464 9.93501 8.25261 9.37307 7.53894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.89089 3.61546 3.63276 6.23125 7.99157

CAGE analysis