Hb_000317_510

Information

Type -
Description -
Location Contig317: 395789-403714
Sequence    

Annotation

kegg
ID rcu:RCOM_1176940
description serine palmitoyltransferase I, putative (EC:2.3.1.50)
nr
ID XP_012079565.1
description PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
swissprot
ID Q94IB8
description Long chain base biosynthesis protein 1 OS=Arabidopsis thaliana GN=LCB1 PE=1 SV=1
trembl
ID A0A067LBR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17429 PE=4 SV=1
Gene Ontology
ID GO:0004758
description long chain base biosynthesis protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33426: 395627-403706
cDNA
(Sanger)
(ID:Location)		 003_L20.ab1: 400621-403660

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_510 0.0 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
2 Hb_103747_020 0.0493504376 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
3 Hb_000373_080 0.0498676271 - - PREDICTED: serine decarboxylase [Jatropha curcas]
4 Hb_002326_110 0.0621136175 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
5 Hb_000362_170 0.0629159925 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
6 Hb_001005_030 0.0648843223 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
7 Hb_002054_050 0.0672801871 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
8 Hb_008247_020 0.0692554081 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
9 Hb_002014_040 0.070786246 - - site-1 protease, putative [Ricinus communis]
10 Hb_003186_020 0.0713917619 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
11 Hb_001405_190 0.0719404281 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
12 Hb_002615_120 0.0721289265 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
13 Hb_005723_020 0.0740528895 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010407_050 0.0749040381 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
15 Hb_000130_420 0.0750022483 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
16 Hb_138435_010 0.075694466 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
17 Hb_143766_110 0.0758088969 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
18 Hb_002686_040 0.0765787234 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
19 Hb_000610_040 0.0785174084 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
20 Hb_000214_050 0.0786367619 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000317_510 Hb_000317_510 Hb_103747_020 Hb_103747_020 Hb_000317_510--Hb_103747_020 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_000317_510--Hb_001005_030 Hb_002054_050 Hb_002054_050 Hb_000317_510--Hb_002054_050 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_003186_020 Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000373_080--Hb_000362_170 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040 Hb_005895_010 Hb_005895_010 Hb_000362_170--Hb_005895_010 Hb_000362_170--Hb_002014_040 Hb_000362_170--Hb_001005_030 Hb_001002_060 Hb_001002_060 Hb_000362_170--Hb_001002_060 Hb_000362_170--Hb_000214_050 Hb_001269_230 Hb_001269_230 Hb_001005_030--Hb_001269_230 Hb_001635_040 Hb_001635_040 Hb_001005_030--Hb_001635_040 Hb_004912_030 Hb_004912_030 Hb_001005_030--Hb_004912_030 Hb_001005_030--Hb_003186_020 Hb_008921_010 Hb_008921_010 Hb_002054_050--Hb_008921_010 Hb_000959_230 Hb_000959_230 Hb_002054_050--Hb_000959_230 Hb_005463_130 Hb_005463_130 Hb_002054_050--Hb_005463_130 Hb_002054_050--Hb_001005_030 Hb_001501_080 Hb_001501_080 Hb_002054_050--Hb_001501_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2661 46.4988 74.5911 48.6769 51.0922 47.4298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5871 18.8192 32.6395 40.0925 37.8732

CAGE analysis