Hb_002326_110

Information

Type -
Description -
Location Contig2326: 105119-118385
Sequence    

Annotation

kegg
ID pmum:103320920
description uncharacterized LOC103320920
nr
ID XP_008220883.1
description PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
swissprot
ID Q9M9Z2
description Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
trembl
ID W9QJL9
description Putative thylakoidal processing peptidase 2 OS=Morus notabilis GN=L484_014439 PE=3 SV=1
Gene Ontology
ID GO:0016021
description thylakoidal processing peptidase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24467: 109388-111013 , PASA_asmbl_24468: 116308-118378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002326_110 0.0 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
2 Hb_005649_100 0.0601629343 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
3 Hb_000085_170 0.0620214441 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
4 Hb_000317_510 0.0621136175 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
5 Hb_000847_080 0.0641474223 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
6 Hb_000373_080 0.0659912967 - - PREDICTED: serine decarboxylase [Jatropha curcas]
7 Hb_002909_040 0.0714053925 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
8 Hb_138435_010 0.0754632113 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
9 Hb_000254_100 0.0773758687 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
10 Hb_025668_010 0.0779978861 - - unnamed protein product [Coffea canephora]
11 Hb_003228_100 0.0784506067 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
12 Hb_002811_270 0.0797549095 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
13 Hb_012506_030 0.0801120228 - - AP-2 complex subunit alpha, putative [Ricinus communis]
14 Hb_004096_060 0.0805376499 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
15 Hb_000089_210 0.08126452 - - unknown [Medicago truncatula]
16 Hb_016777_040 0.081772741 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
17 Hb_007290_030 0.0830828329 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
18 Hb_043792_010 0.0831123065 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
19 Hb_002326_040 0.083220215 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_023313_040 0.0832803432 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002326_110 Hb_002326_110 Hb_005649_100 Hb_005649_100 Hb_002326_110--Hb_005649_100 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002909_040 Hb_002909_040 Hb_002326_110--Hb_002909_040 Hb_005649_100--Hb_002909_040 Hb_000940_050 Hb_000940_050 Hb_005649_100--Hb_000940_050 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_003228_100 Hb_003228_100 Hb_005649_100--Hb_003228_100 Hb_000012_270 Hb_000012_270 Hb_005649_100--Hb_000012_270 Hb_000510_360 Hb_000510_360 Hb_000085_170--Hb_000510_360 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_000321_140 Hb_000321_140 Hb_000085_170--Hb_000321_140 Hb_012506_030 Hb_012506_030 Hb_000085_170--Hb_012506_030 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_103747_020 Hb_103747_020 Hb_000317_510--Hb_103747_020 Hb_000317_510--Hb_000373_080 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_000317_510--Hb_001005_030 Hb_002054_050 Hb_002054_050 Hb_000317_510--Hb_002054_050 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_000847_080--Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_001377_310 Hb_001377_310 Hb_000373_080--Hb_001377_310 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000373_080--Hb_000362_170 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_000089_210 Hb_000089_210 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.79485 9.20304 20.3959 11.2441 9.46425 8.29456
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.62235 5.0151 6.99152 9.21686 8.70648

CAGE analysis