Hb_004096_160

Information

Type -
Description -
Location Contig4096: 156535-164214
Sequence    

Annotation

kegg
ID rcu:RCOM_1727810
description chaperonin containing t-complex protein 1, zeta subunit, tcpz, putative
nr
ID XP_012077951.1
description PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
swissprot
ID Q9M888
description T-complex protein 1 subunit zeta 1 OS=Arabidopsis thaliana GN=CCT6A PE=1 SV=1
trembl
ID A0A067KKY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12971 PE=3 SV=1
Gene Ontology
ID GO:0005737
description t-complex protein 1 subunit zeta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40430: 156771-164001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_160 0.0 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
2 Hb_000958_080 0.0459936318 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002909_040 0.0580515673 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
4 Hb_009449_060 0.0640046986 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
5 Hb_000089_210 0.0678408201 - - unknown [Medicago truncatula]
6 Hb_161568_010 0.0710802485 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_000236_490 0.0732634431 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_005730_010 0.0760830893 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
9 Hb_007413_040 0.0764756359 - - myo inositol monophosphatase, putative [Ricinus communis]
10 Hb_000019_190 0.080950349 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
11 Hb_023313_040 0.0810997678 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
12 Hb_000513_090 0.0818588103 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
13 Hb_001366_090 0.0847472118 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
14 Hb_000207_200 0.0848880074 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
15 Hb_005649_100 0.0879697082 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_002311_380 0.0882739855 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
17 Hb_002014_010 0.0886147476 - - Uncharacterized protein isoform 1 [Theobroma cacao]
18 Hb_003449_100 0.0900565315 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
19 Hb_000702_090 0.090866892 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
20 Hb_001699_010 0.0921575642 - - drought-inducible protein [Manihot esculenta]

Gene co-expression network

sample Hb_004096_160 Hb_004096_160 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_002909_040 Hb_002909_040 Hb_004096_160--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000958_080--Hb_000089_210 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_000207_200 Hb_000207_200 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002909_040--Hb_000089_210 Hb_002909_040--Hb_009449_060 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000089_210--Hb_000207_200 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_004228_120 Hb_004228_120 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_161568_010--Hb_000958_080 Hb_000703_160 Hb_000703_160 Hb_161568_010--Hb_000703_160 Hb_000497_190 Hb_000497_190 Hb_161568_010--Hb_000497_190 Hb_004586_060 Hb_004586_060 Hb_000236_490--Hb_004586_060 Hb_007062_040 Hb_007062_040 Hb_000236_490--Hb_007062_040 Hb_000236_490--Hb_000513_090 Hb_000236_490--Hb_002909_040 Hb_001366_090 Hb_001366_090 Hb_000236_490--Hb_001366_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7645 25.4543 43.4658 31.6329 18.4994 16.7764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7727 15.3256 10.7809 20.156 13.1259

CAGE analysis