Hb_005649_100

Information

Type -
Description -
Location Contig5649: 55080-61856
Sequence    

Annotation

kegg
ID rcu:RCOM_1025530
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_002527619.1
description Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID B9SNQ0
description Ras-GTPase-activating protein-binding protein, putative OS=Ricinus communis GN=RCOM_1025530 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48978: 55065-61861 , PASA_asmbl_48979: 61171-61530 , PASA_asmbl_48980: 56569-56809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_100 0.0 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
2 Hb_002326_110 0.0601629343 - - PREDICTED: uncharacterized protein LOC103320920 [Prunus mume]
3 Hb_002909_040 0.0778690541 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
4 Hb_000940_050 0.0780746172 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
5 Hb_000207_200 0.0781387608 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
6 Hb_003228_100 0.0810675807 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
7 Hb_000012_270 0.0818996361 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
8 Hb_161568_010 0.0829108414 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_016448_010 0.0837749202 - - Protein MYG1, putative [Ricinus communis]
10 Hb_000089_210 0.0840441815 - - unknown [Medicago truncatula]
11 Hb_003506_030 0.0843558277 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000847_080 0.084706519 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
13 Hb_029695_080 0.0861311767 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
14 Hb_004096_160 0.0879697082 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
15 Hb_003119_090 0.0909757955 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
16 Hb_025668_010 0.0910111925 - - unnamed protein product [Coffea canephora]
17 Hb_000589_190 0.0917458423 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
18 Hb_000254_100 0.0920586349 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
19 Hb_043792_010 0.0923010214 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
20 Hb_002686_080 0.0927007946 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005649_100 Hb_005649_100 Hb_002326_110 Hb_002326_110 Hb_005649_100--Hb_002326_110 Hb_002909_040 Hb_002909_040 Hb_005649_100--Hb_002909_040 Hb_000940_050 Hb_000940_050 Hb_005649_100--Hb_000940_050 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_003228_100 Hb_003228_100 Hb_005649_100--Hb_003228_100 Hb_000012_270 Hb_000012_270 Hb_005649_100--Hb_000012_270 Hb_000085_170 Hb_000085_170 Hb_002326_110--Hb_000085_170 Hb_000317_510 Hb_000317_510 Hb_002326_110--Hb_000317_510 Hb_000847_080 Hb_000847_080 Hb_002326_110--Hb_000847_080 Hb_000373_080 Hb_000373_080 Hb_002326_110--Hb_000373_080 Hb_002326_110--Hb_002909_040 Hb_004096_160 Hb_004096_160 Hb_002909_040--Hb_004096_160 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_000089_210 Hb_000089_210 Hb_002909_040--Hb_000089_210 Hb_009449_060 Hb_009449_060 Hb_002909_040--Hb_009449_060 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_000139_220 Hb_000139_220 Hb_000940_050--Hb_000139_220 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_009659_030 Hb_009659_030 Hb_000940_050--Hb_009659_030 Hb_000940_050--Hb_004096_160 Hb_003470_040 Hb_003470_040 Hb_000207_200--Hb_003470_040 Hb_000207_200--Hb_000089_210 Hb_033642_120 Hb_033642_120 Hb_000207_200--Hb_033642_120 Hb_029695_080 Hb_029695_080 Hb_000207_200--Hb_029695_080 Hb_002110_160 Hb_002110_160 Hb_000207_200--Hb_002110_160 Hb_003228_100--Hb_000012_270 Hb_002870_020 Hb_002870_020 Hb_003228_100--Hb_002870_020 Hb_004032_370 Hb_004032_370 Hb_003228_100--Hb_004032_370 Hb_006846_170 Hb_006846_170 Hb_003228_100--Hb_006846_170 Hb_003228_100--Hb_002326_110 Hb_002249_020 Hb_002249_020 Hb_003228_100--Hb_002249_020 Hb_000959_220 Hb_000959_220 Hb_000012_270--Hb_000959_220 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44837 6.8541 19.2975 9.16395 7.92223 5.60222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.57238 4.88998 5.13707 7.39652 6.90123

CAGE analysis