Hb_000940_050

Information

Type -
Description -
Location Contig940: 43117-47985
Sequence    

Annotation

kegg
ID rcu:RCOM_0660600
description translocon-associated protein, alpha subunit, putative
nr
ID KDP27583.1
description hypothetical protein JCGZ_19588 [Jatropha curcas]
swissprot
ID P45434
description Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3
trembl
ID A0A067JXN5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19588 PE=4 SV=1
Gene Ontology
ID GO:0005789
description translocon-associated protein subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63138: 43130-47955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000940_050 0.0 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
2 Hb_001824_030 0.0762185892 - - plant sec1, putative [Ricinus communis]
3 Hb_005649_100 0.0780746172 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
4 Hb_000139_220 0.0887379257 - - leucine rich repeat-containing protein, putative [Ricinus communis]
5 Hb_016448_010 0.0987647059 - - Protein MYG1, putative [Ricinus communis]
6 Hb_009659_030 0.1014035009 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
7 Hb_004096_160 0.1018311536 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
8 Hb_000497_190 0.1041433345 - - sterol isomerase, putative [Ricinus communis]
9 Hb_009449_060 0.1052591493 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
10 Hb_029695_080 0.1061612571 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
11 Hb_011344_070 0.1091394265 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
12 Hb_000207_200 0.1096626755 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
13 Hb_032823_020 0.1101711974 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003470_040 0.1103591931 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
15 Hb_003506_030 0.1110367487 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_161568_010 0.1110961933 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_000703_160 0.1120261655 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
18 Hb_000958_080 0.1120918568 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005144_210 0.1131099007 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007413_040 0.1132277026 - - myo inositol monophosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000940_050 Hb_000940_050 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_000139_220 Hb_000139_220 Hb_000940_050--Hb_000139_220 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_009659_030 Hb_009659_030 Hb_000940_050--Hb_009659_030 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160 Hb_001824_030--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_001824_030--Hb_003506_030 Hb_002045_170 Hb_002045_170 Hb_001824_030--Hb_002045_170 Hb_011716_010 Hb_011716_010 Hb_001824_030--Hb_011716_010 Hb_003449_100 Hb_003449_100 Hb_001824_030--Hb_003449_100 Hb_002326_110 Hb_002326_110 Hb_005649_100--Hb_002326_110 Hb_002909_040 Hb_002909_040 Hb_005649_100--Hb_002909_040 Hb_000207_200 Hb_000207_200 Hb_005649_100--Hb_000207_200 Hb_003228_100 Hb_003228_100 Hb_005649_100--Hb_003228_100 Hb_000012_270 Hb_000012_270 Hb_005649_100--Hb_000012_270 Hb_000077_120 Hb_000077_120 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_012438_030 Hb_012438_030 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010 Hb_075203_010 Hb_075203_010 Hb_009659_030--Hb_075203_010 Hb_000134_250 Hb_000134_250 Hb_009659_030--Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_009659_030--Hb_000994_020 Hb_011344_070 Hb_011344_070 Hb_009659_030--Hb_011344_070 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_000958_080 Hb_000958_080 Hb_004096_160--Hb_000958_080 Hb_004096_160--Hb_002909_040 Hb_004096_160--Hb_009449_060 Hb_000089_210 Hb_000089_210 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.6335 41.305 126.763 53.6903 39.5973 33.3741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9118 26.1261 15.7282 49.1098 32.0937

CAGE analysis