Hb_075203_010

Information

Type -
Description -
Location Contig75203: 5057-13677
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00630g
description POPTRDRAFT_826066; calcium-dependent protein kinase 1
nr
ID XP_012088375.1
description PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
swissprot
ID P28583
description Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1
trembl
ID A0A067JXH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25866 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase sk5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56878: 7397-13570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075203_010 0.0 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
2 Hb_009659_030 0.0857627727 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
3 Hb_002259_110 0.0986979155 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
4 Hb_000134_250 0.1069291968 - - protein with unknown function [Ricinus communis]
5 Hb_000062_360 0.1161143643 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
6 Hb_011344_070 0.1216576152 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
7 Hb_054865_020 0.1239796735 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
8 Hb_005323_010 0.1246622166 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]
9 Hb_000098_240 0.1263589875 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
10 Hb_007777_010 0.1268377296 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
11 Hb_005873_020 0.1272961313 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_000994_020 0.1300023281 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
13 Hb_000803_090 0.1304018452 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
14 Hb_010287_030 0.1322454367 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001373_160 0.1332886431 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
16 Hb_004267_060 0.1341716408 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_000985_040 0.1366685622 transcription factor TF Family: Orphans B-box type zinc finger protein with CCT domain isoform 1 [Theobroma cacao]
18 Hb_000940_050 0.1370022949 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
19 Hb_005833_030 0.1376877314 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
20 Hb_004800_150 0.1378354898 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_075203_010 Hb_075203_010 Hb_009659_030 Hb_009659_030 Hb_075203_010--Hb_009659_030 Hb_002259_110 Hb_002259_110 Hb_075203_010--Hb_002259_110 Hb_000134_250 Hb_000134_250 Hb_075203_010--Hb_000134_250 Hb_000062_360 Hb_000062_360 Hb_075203_010--Hb_000062_360 Hb_011344_070 Hb_011344_070 Hb_075203_010--Hb_011344_070 Hb_054865_020 Hb_054865_020 Hb_075203_010--Hb_054865_020 Hb_009659_030--Hb_000134_250 Hb_000994_020 Hb_000994_020 Hb_009659_030--Hb_000994_020 Hb_009659_030--Hb_011344_070 Hb_000940_050 Hb_000940_050 Hb_009659_030--Hb_000940_050 Hb_005833_030 Hb_005833_030 Hb_009659_030--Hb_005833_030 Hb_002553_010 Hb_002553_010 Hb_002259_110--Hb_002553_010 Hb_152910_010 Hb_152910_010 Hb_002259_110--Hb_152910_010 Hb_001133_090 Hb_001133_090 Hb_002259_110--Hb_001133_090 Hb_002259_110--Hb_000134_250 Hb_001373_160 Hb_001373_160 Hb_002259_110--Hb_001373_160 Hb_000134_250--Hb_000994_020 Hb_000134_250--Hb_001373_160 Hb_000260_770 Hb_000260_770 Hb_000134_250--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000134_250--Hb_006501_010 Hb_010287_030 Hb_010287_030 Hb_000134_250--Hb_010287_030 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000062_360--Hb_001322_020 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_000139_220 Hb_000139_220 Hb_011344_070--Hb_000139_220 Hb_011344_070--Hb_000940_050 Hb_004800_150 Hb_004800_150 Hb_011344_070--Hb_004800_150 Hb_000985_040 Hb_000985_040 Hb_011344_070--Hb_000985_040 Hb_005873_020 Hb_005873_020 Hb_054865_020--Hb_005873_020 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_000631_090 Hb_000631_090 Hb_054865_020--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_054865_020--Hb_052128_010 Hb_004718_060 Hb_004718_060 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1527 16.1358 36.6581 14.1891 10.3986 9.40588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.31912 1.51118 2.27543 15.7938 13.2554

CAGE analysis