Hb_001369_030

Information

Type -
Description -
Location Contig1369: 29302-39232
Sequence    

Annotation

kegg
ID tcc:TCM_014869
description Diacylglycerol kinase family protein isoform 1
nr
ID XP_012090485.1
description PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
swissprot
ID Q6USK2
description Ceramide kinase OS=Arabidopsis thaliana GN=CERK PE=1 SV=1
trembl
ID A0A067JEX4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26287 PE=4 SV=1
Gene Ontology
ID GO:0001729
description ceramide kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10123: 29132-31173 , PASA_asmbl_10124: 31613-39298 , PASA_asmbl_10125: 34723-34986 , PASA_asmbl_10128: 31681-32515 , PASA_asmbl_10129: 35414-35735 , PASA_asmbl_10131: 33689-33901 , PASA_asmbl_10132: 34049-34243
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_030 0.0 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
2 Hb_000086_430 0.0813468021 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
3 Hb_000212_300 0.0836259936 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
4 Hb_000062_360 0.0841108972 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
5 Hb_001009_120 0.0888545156 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
6 Hb_004267_060 0.0915340168 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_000836_540 0.094716131 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
8 Hb_000796_120 0.0951737875 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
9 Hb_001558_060 0.1000592383 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
10 Hb_009178_010 0.101446751 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
11 Hb_000086_270 0.1058518802 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
12 Hb_003925_060 0.1059601766 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
13 Hb_005873_020 0.1076264282 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_027380_210 0.1087542711 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
15 Hb_002107_100 0.109056017 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
16 Hb_003470_040 0.1091519431 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
17 Hb_010368_080 0.1091575436 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
18 Hb_000048_080 0.1092217531 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_104920_010 0.1098955128 - - hypothetical protein VITISV_031859 [Vitis vinifera]
20 Hb_005941_020 0.1101035743 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_030 Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001369_030--Hb_000062_360 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_000048_080 Hb_000048_080 Hb_000086_430--Hb_000048_080 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_000212_300--Hb_000062_360 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_005941_020 Hb_005941_020 Hb_000212_300--Hb_005941_020 Hb_001322_020 Hb_001322_020 Hb_000062_360--Hb_001322_020 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_000956_040 Hb_000956_040 Hb_001009_120--Hb_000956_040 Hb_006452_180 Hb_006452_180 Hb_001009_120--Hb_006452_180 Hb_004319_050 Hb_004319_050 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_004267_060--Hb_001009_120 Hb_004267_060--Hb_000086_430 Hb_001621_110 Hb_001621_110 Hb_004267_060--Hb_001621_110 Hb_000609_110 Hb_000609_110 Hb_000836_540--Hb_000609_110 Hb_005694_130 Hb_005694_130 Hb_000836_540--Hb_005694_130 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_000453_230 Hb_000453_230 Hb_000836_540--Hb_000453_230 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.7111 20.492 31.806 8.16759 6.32562 6.09704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92374 4.53857 4.10455 8.5365 11.6202

CAGE analysis