Hb_001500_120

Information

Type -
Description -
Location Contig1500: 122801-126666
Sequence    

Annotation

kegg
ID rcu:RCOM_1437480
description abc transporter, putative (EC:3.6.3.25)
nr
ID AIU41661.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9AT00
description Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1
trembl
ID A0A097P9U3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI13 PE=2 SV=1
Gene Ontology
ID GO:0005524
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12542: 122761-126667 , PASA_asmbl_12543: 122761-123714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001500_120 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_005977_030 0.0593573528 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
3 Hb_000723_030 0.0699940812 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
4 Hb_004712_190 0.0727944555 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
5 Hb_002311_480 0.0750735761 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
6 Hb_011671_310 0.0759315677 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
7 Hb_003470_040 0.0822418932 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
8 Hb_004225_060 0.0826340123 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
9 Hb_000089_210 0.0841477577 - - unknown [Medicago truncatula]
10 Hb_003687_120 0.0860486144 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
11 Hb_000086_430 0.0862563955 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
12 Hb_000048_080 0.0874820576 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
13 Hb_000207_200 0.0909495455 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
14 Hb_001776_210 0.0920312152 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
15 Hb_002203_030 0.0924382863 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
16 Hb_006452_180 0.0998042428 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_001005_020 0.1008579333 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
18 Hb_010775_030 0.1011020041 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
19 Hb_000476_060 0.1021441259 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
20 Hb_000160_140 0.1025252431 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001500_120 Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_005977_030--Hb_004712_190 Hb_005977_030--Hb_011671_310 Hb_004225_060 Hb_004225_060 Hb_000723_030--Hb_004225_060 Hb_000160_140 Hb_000160_140 Hb_000723_030--Hb_000160_140 Hb_002203_030 Hb_002203_030 Hb_000723_030--Hb_002203_030 Hb_003687_120 Hb_003687_120 Hb_000723_030--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_000723_030--Hb_029622_120 Hb_014231_020 Hb_014231_020 Hb_004712_190--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080 Hb_002311_480--Hb_011671_310 Hb_000979_060 Hb_000979_060 Hb_002311_480--Hb_000979_060 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_029695_080 Hb_029695_080 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003470_040--Hb_003687_120 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.138 22.4478 42.9337 16.8966 7.39219 11.5138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2453 14.0895 11.7248 14.8936 14.7564

CAGE analysis