Hb_002311_480

Information

Type -
Description -
Location Contig2311: 250707-255007
Sequence    

Annotation

kegg
ID rcu:RCOM_0682050
description hypothetical protein
nr
ID XP_012083980.1
description PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
swissprot
ID Q9LUR0
description Condensin-2 complex subunit H2 OS=Arabidopsis thaliana GN=CAPH2 PE=2 SV=1
trembl
ID A0A067JVC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18912 PE=4 SV=1
Gene Ontology
ID GO:2001022
description condensin-2 complex subunit h2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24341: 250910-253419 , PASA_asmbl_24342: 253437-254502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_480 0.0 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
2 Hb_001500_120 0.0750735761 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_011671_310 0.0817768965 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
4 Hb_000979_060 0.094744812 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
5 Hb_005977_030 0.0995220869 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
6 Hb_004943_030 0.1005982662 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
7 Hb_000048_080 0.1016516841 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
8 Hb_010775_030 0.1023949534 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
9 Hb_004225_060 0.10363738 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
10 Hb_001005_020 0.1036609118 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
11 Hb_000579_190 0.1039549413 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
12 Hb_000375_290 0.1082900131 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000086_430 0.1088003663 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
14 Hb_005194_020 0.1116198843 - - PREDICTED: UPF0553 protein-like isoform X1 [Jatropha curcas]
15 Hb_000723_030 0.11237295 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
16 Hb_006452_180 0.1128898992 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
17 Hb_004712_190 0.1139069411 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
18 Hb_000089_210 0.1139629503 - - unknown [Medicago truncatula]
19 Hb_002110_160 0.1145650631 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
20 Hb_000120_250 0.1157157839 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_480 Hb_002311_480 Hb_001500_120 Hb_001500_120 Hb_002311_480--Hb_001500_120 Hb_011671_310 Hb_011671_310 Hb_002311_480--Hb_011671_310 Hb_000979_060 Hb_000979_060 Hb_002311_480--Hb_000979_060 Hb_005977_030 Hb_005977_030 Hb_002311_480--Hb_005977_030 Hb_004943_030 Hb_004943_030 Hb_002311_480--Hb_004943_030 Hb_000048_080 Hb_000048_080 Hb_002311_480--Hb_000048_080 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_011671_310--Hb_005977_030 Hb_001005_020 Hb_001005_020 Hb_011671_310--Hb_001005_020 Hb_001761_120 Hb_001761_120 Hb_011671_310--Hb_001761_120 Hb_007290_030 Hb_007290_030 Hb_011671_310--Hb_007290_030 Hb_000684_100 Hb_000684_100 Hb_000979_060--Hb_000684_100 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_000009_220 Hb_000009_220 Hb_000979_060--Hb_000009_220 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000579_190 Hb_000579_190 Hb_000979_060--Hb_000579_190 Hb_000089_210 Hb_000089_210 Hb_005977_030--Hb_000089_210 Hb_005977_030--Hb_003470_040 Hb_000476_060 Hb_000476_060 Hb_005977_030--Hb_000476_060 Hb_005977_030--Hb_004712_190 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_008695_090 Hb_008695_090 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_004943_030--Hb_023226_070 Hb_000086_430 Hb_000086_430 Hb_000048_080--Hb_000086_430 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_000375_290 Hb_000375_290 Hb_000048_080--Hb_000375_290 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55807 4.04377 6.30623 2.60265 1.16945 1.52298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92466 2.54651 2.12215 2.08582 1.31148

CAGE analysis