Hb_008695_090

Information

Type -
Description -
Location Contig8695: 65764-73214
Sequence    

Annotation

kegg
ID rcu:RCOM_1032850
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_012078154.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A067K9I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12034 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61096: 65772-73477
cDNA
(Sanger)
(ID:Location)		 005_L06.ab1: 72714-73477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008695_090 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
2 Hb_004943_030 0.0770281019 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
3 Hb_000375_290 0.0795616496 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_003682_030 0.079739367 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
5 Hb_000723_110 0.0841587023 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_001754_030 0.0856834805 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
7 Hb_000169_080 0.0877448142 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
8 Hb_001225_030 0.0883747197 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
9 Hb_001245_050 0.0896744753 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
10 Hb_006538_130 0.0903251401 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
11 Hb_023226_070 0.0930680602 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000905_210 0.0941227293 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_007017_070 0.0943375767 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_000579_190 0.0944525416 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
15 Hb_000373_230 0.0965962996 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
16 Hb_011930_110 0.0971426133 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
17 Hb_003605_050 0.0994847791 - - protein with unknown function [Ricinus communis]
18 Hb_001766_020 0.1004978368 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
19 Hb_060094_020 0.1022940426 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
20 Hb_000094_090 0.1023047626 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008695_090 Hb_008695_090 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_000375_290 Hb_000375_290 Hb_008695_090--Hb_000375_290 Hb_003682_030 Hb_003682_030 Hb_008695_090--Hb_003682_030 Hb_000723_110 Hb_000723_110 Hb_008695_090--Hb_000723_110 Hb_001754_030 Hb_001754_030 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_004943_030--Hb_023226_070 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_000375_290--Hb_023226_070 Hb_003682_030--Hb_001225_030 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_003682_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_003682_030--Hb_000094_090 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000809_160 Hb_000809_160 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_001754_030--Hb_023226_070 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_001754_030--Hb_000723_110 Hb_001761_120 Hb_001761_120 Hb_000169_080--Hb_001761_120 Hb_043792_010 Hb_043792_010 Hb_000169_080--Hb_043792_010 Hb_000169_080--Hb_004943_030 Hb_001410_020 Hb_001410_020 Hb_000169_080--Hb_001410_020 Hb_001005_020 Hb_001005_020 Hb_000169_080--Hb_001005_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.0457 77.6894 59.6282 28.5556 27.7339 30.4476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5372 25.327 31.2256 18.4048 18.2173

CAGE analysis