Hb_000375_290

Information

Type -
Description -
Location Contig375: 293903-296700
Sequence    

Annotation

kegg
ID rcu:RCOM_0038710
description DAG protein, chloroplast precursor, putative
nr
ID XP_002532881.1
description DAG protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID O22793
description Multiple organellar RNA editing factor 2, chloroplastic OS=Arabidopsis thaliana GN=MORF2 PE=1 SV=1
trembl
ID B9T3R2
description DAG protein, chloroplast, putative OS=Ricinus communis GN=RCOM_0038710 PE=4 SV=1
Gene Ontology
ID GO:0000478
description dag chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38265: 293907-296776
cDNA
(Sanger)
(ID:Location)		 016_A20.ab1: 294232-296772 , 023_I02.ab1: 294288-296758 , 023_K21.ab1: 296354-296775 , 023_O04.ab1: 294222-296730 , 024_B24.ab1: 294286-296758 , 033_E07.ab1: 294284-296758 , 035_L03.ab1: 294208-296772 , 038_J17.ab1: 294201-296756

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_290 0.0 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_001225_030 0.0695810768 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
3 Hb_004870_050 0.0747412682 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
4 Hb_000048_080 0.0755618054 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
5 Hb_001558_060 0.0767525132 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
6 Hb_000579_190 0.0786258759 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
7 Hb_023226_070 0.0789689365 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008695_090 0.0795616496 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
9 Hb_006538_130 0.0795646394 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
10 Hb_001245_050 0.0795996234 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
11 Hb_004943_030 0.0851932027 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
12 Hb_010287_020 0.086206291 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000094_090 0.0864672835 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
14 Hb_000723_110 0.0874023135 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
15 Hb_000003_400 0.0896372225 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_000866_450 0.090628197 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_002110_160 0.0907878445 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
18 Hb_004648_090 0.0916064644 - - peroxisomal biogenesis factor, putative [Ricinus communis]
19 Hb_060094_020 0.0922192274 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
20 Hb_002811_040 0.0946736541 - - 5'->3' exoribonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_000375_290 Hb_000375_290 Hb_001225_030 Hb_001225_030 Hb_000375_290--Hb_001225_030 Hb_004870_050 Hb_004870_050 Hb_000375_290--Hb_004870_050 Hb_000048_080 Hb_000048_080 Hb_000375_290--Hb_000048_080 Hb_001558_060 Hb_001558_060 Hb_000375_290--Hb_001558_060 Hb_000579_190 Hb_000579_190 Hb_000375_290--Hb_000579_190 Hb_023226_070 Hb_023226_070 Hb_000375_290--Hb_023226_070 Hb_003682_030 Hb_003682_030 Hb_001225_030--Hb_003682_030 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_001225_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_000086_430 Hb_000086_430 Hb_000048_080--Hb_000086_430 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_001558_060--Hb_023226_070 Hb_008165_030 Hb_008165_030 Hb_001558_060--Hb_008165_030 Hb_003992_180 Hb_003992_180 Hb_001558_060--Hb_003992_180 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_001005_020 Hb_001005_020 Hb_000579_190--Hb_001005_020 Hb_004236_030 Hb_004236_030 Hb_000579_190--Hb_004236_030 Hb_004943_030 Hb_004943_030 Hb_000579_190--Hb_004943_030 Hb_008695_090 Hb_008695_090 Hb_000579_190--Hb_008695_090 Hb_023226_070--Hb_060094_020 Hb_023226_070--Hb_000094_090 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_023226_070--Hb_002811_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
111.592 246.718 228.079 91.6617 81.8362 85.2331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.8862 99.839 63.9258 76.9441 84.2517

CAGE analysis