Hb_000086_430

Information

Type -
Description -
Location Contig86: 343557-352454
Sequence    

Annotation

kegg
ID rcu:RCOM_0543270
description protein with unknown function
nr
ID KDP26491.1
description hypothetical protein JCGZ_17649 [Jatropha curcas]
swissprot
ID Q9SY60
description Exocyst complex component EXO84C OS=Arabidopsis thaliana GN=EXO84C PE=2 SV=1
trembl
ID A0A067JRA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17649 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60739: 343549-344037 , PASA_asmbl_60740: 344093-344366 , PASA_asmbl_60741: 344452-345038 , PASA_asmbl_60742: 345083-346432 , PASA_asmbl_60744: 350399-352369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_430 0.0 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
2 Hb_000048_080 0.0663375504 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
3 Hb_001369_030 0.0813468021 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
4 Hb_001500_120 0.0862563955 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_001009_120 0.0897187537 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
6 Hb_001558_060 0.0913261354 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X2 [Jatropha curcas]
7 Hb_004225_060 0.0978060811 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
8 Hb_003470_040 0.0992995152 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
9 Hb_000956_040 0.1004094085 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
10 Hb_004267_060 0.1011634087 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000638_280 0.1020650786 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
12 Hb_000796_120 0.1022602837 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
13 Hb_006452_180 0.1022629227 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
14 Hb_010287_020 0.1031715382 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
15 Hb_003777_110 0.1041533057 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
16 Hb_000086_270 0.1045954197 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
17 Hb_000375_290 0.1046930661 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_000160_140 0.1052891675 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
19 Hb_033152_090 0.1059292162 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
20 Hb_000723_030 0.1070557655 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000086_430 Hb_000086_430 Hb_000048_080 Hb_000048_080 Hb_000086_430--Hb_000048_080 Hb_001369_030 Hb_001369_030 Hb_000086_430--Hb_001369_030 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_001009_120 Hb_001009_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_000375_290 Hb_000375_290 Hb_000048_080--Hb_000375_290 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_000212_300 Hb_000212_300 Hb_001369_030--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001369_030--Hb_000062_360 Hb_001369_030--Hb_001009_120 Hb_004267_060 Hb_004267_060 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_005977_030 Hb_005977_030 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_001500_120--Hb_003470_040 Hb_033152_090 Hb_033152_090 Hb_001009_120--Hb_033152_090 Hb_000640_190 Hb_000640_190 Hb_001009_120--Hb_000640_190 Hb_000956_040 Hb_000956_040 Hb_001009_120--Hb_000956_040 Hb_001009_120--Hb_006452_180 Hb_001009_120--Hb_004319_050 Hb_009178_010 Hb_009178_010 Hb_001009_120--Hb_009178_010 Hb_023226_070 Hb_023226_070 Hb_001558_060--Hb_023226_070 Hb_001558_060--Hb_000375_290 Hb_008165_030 Hb_008165_030 Hb_001558_060--Hb_008165_030 Hb_003992_180 Hb_003992_180 Hb_001558_060--Hb_003992_180 Hb_000579_190 Hb_000579_190 Hb_001558_060--Hb_000579_190 Hb_002811_040 Hb_002811_040 Hb_001558_060--Hb_002811_040 Hb_000160_140 Hb_000160_140 Hb_004225_060--Hb_000160_140 Hb_004225_060--Hb_000723_030 Hb_004225_060--Hb_001500_120 Hb_002203_030 Hb_002203_030 Hb_004225_060--Hb_002203_030 Hb_003687_120 Hb_003687_120 Hb_004225_060--Hb_003687_120 Hb_029622_120 Hb_029622_120 Hb_004225_060--Hb_029622_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.65477 5.42328 7.56477 2.77279 1.16725 1.55609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35433 1.89466 1.42625 2.10456 2.52491

CAGE analysis