Hb_000062_360

Information

Type -
Description -
Location Contig62: 279088-287552
Sequence    

Annotation

kegg
ID rcu:RCOM_1081910
description alpha DNA polymerase, putative
nr
ID XP_012085629.1
description PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
swissprot
ID Q14181
description DNA polymerase alpha subunit B OS=Homo sapiens GN=POLA2 PE=1 SV=2
trembl
ID B9RMM9
description DNA polymerase alpha subunit B OS=Ricinus communis GN=RCOM_1081910 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase alpha subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51447: 279010-279880 , PASA_asmbl_51448: 282290-282682 , PASA_asmbl_51449: 283470-284176 , PASA_asmbl_51450: 284949-288415
cDNA
(Sanger)
(ID:Location)		 037_O10.ab1: 287192-287621

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_360 0.0 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
2 Hb_001369_030 0.0841108972 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
3 Hb_000212_300 0.0885733754 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
4 Hb_001322_020 0.0959761512 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
5 Hb_004267_060 0.1010776687 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_172257_010 0.1080419494 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
7 Hb_003470_040 0.1091986442 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
8 Hb_000796_120 0.1141699094 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
9 Hb_000048_080 0.1158914896 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
10 Hb_075203_010 0.1161143643 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
11 Hb_009178_010 0.1163216841 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
12 Hb_000086_430 0.1169466673 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
13 Hb_000139_220 0.1172285571 - - leucine rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000260_770 0.1175357872 - - er lumen protein retaining receptor, putative [Ricinus communis]
15 Hb_000345_290 0.1192289614 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_009449_060 0.1198168671 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
17 Hb_001009_120 0.1198983001 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_002107_100 0.119986478 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
19 Hb_000940_050 0.1207581503 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
20 Hb_014231_020 0.1214150039 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]

Gene co-expression network

sample Hb_000062_360 Hb_000062_360 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000062_360--Hb_001322_020 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_000086_430 Hb_000086_430 Hb_001369_030--Hb_000086_430 Hb_001369_030--Hb_000212_300 Hb_001009_120 Hb_001009_120 Hb_001369_030--Hb_001009_120 Hb_001369_030--Hb_004267_060 Hb_000836_540 Hb_000836_540 Hb_001369_030--Hb_000836_540 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_005941_020 Hb_005941_020 Hb_000212_300--Hb_005941_020 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_000260_770 Hb_000260_770 Hb_004267_060--Hb_000260_770 Hb_004267_060--Hb_001009_120 Hb_004267_060--Hb_000086_430 Hb_001621_110 Hb_001621_110 Hb_004267_060--Hb_001621_110 Hb_005322_050 Hb_005322_050 Hb_172257_010--Hb_005322_050 Hb_000300_550 Hb_000300_550 Hb_172257_010--Hb_000300_550 Hb_152910_010 Hb_152910_010 Hb_172257_010--Hb_152910_010 Hb_007163_060 Hb_007163_060 Hb_172257_010--Hb_007163_060 Hb_009449_060 Hb_009449_060 Hb_172257_010--Hb_009449_060 Hb_000302_170 Hb_000302_170 Hb_172257_010--Hb_000302_170 Hb_003470_040--Hb_029695_080 Hb_000207_200 Hb_000207_200 Hb_003470_040--Hb_000207_200 Hb_033642_120 Hb_033642_120 Hb_003470_040--Hb_033642_120 Hb_003687_120 Hb_003687_120 Hb_003470_040--Hb_003687_120 Hb_000089_210 Hb_000089_210 Hb_003470_040--Hb_000089_210 Hb_002110_160 Hb_002110_160 Hb_003470_040--Hb_002110_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82211 3.90144 7.17039 2.3997 1.82171 1.37444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25916 0.921223 0.461691 1.9912 1.80096

CAGE analysis