Hb_014231_020

Information

Type -
Description -
Location Contig14231: 29192-31114
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011070mg
description hypothetical protein
nr
ID XP_012081614.1
description PREDICTED: ras-related protein Rab11D [Jatropha curcas]
swissprot
ID Q40191
description Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
trembl
ID A0A067K3Y4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18653 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab11a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11266: 29189-31197 , PASA_asmbl_11267: 29200-31197 , PASA_asmbl_11268: 30096-30427
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014231_020 0.0 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
2 Hb_004712_190 0.070565573 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
3 Hb_001863_160 0.0893824029 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
4 Hb_000703_160 0.0921324319 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
5 Hb_005144_210 0.0922312364 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000009_220 0.0933491199 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
7 Hb_001307_190 0.0966458796 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_001191_080 0.0973969317 - - protein with unknown function [Ricinus communis]
9 Hb_001322_020 0.1010728938 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
10 Hb_003449_100 0.1038924674 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
11 Hb_000048_080 0.1062012294 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
12 Hb_000363_350 0.107639975 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
13 Hb_000958_080 0.1098982925 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000787_080 0.1111466055 - - PREDICTED: TBC1 domain family member 16-like [Jatropha curcas]
15 Hb_000086_430 0.1120121312 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
16 Hb_003506_030 0.1122920634 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_009449_060 0.1129605127 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
18 Hb_000098_150 0.1145232749 - - DNA helicase hus2, putative [Ricinus communis]
19 Hb_001500_120 0.1154013771 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000089_210 0.116280123 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_014231_020 Hb_014231_020 Hb_004712_190 Hb_004712_190 Hb_014231_020--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_014231_020--Hb_001863_160 Hb_000703_160 Hb_000703_160 Hb_014231_020--Hb_000703_160 Hb_005144_210 Hb_005144_210 Hb_014231_020--Hb_005144_210 Hb_000009_220 Hb_000009_220 Hb_014231_020--Hb_000009_220 Hb_001307_190 Hb_001307_190 Hb_014231_020--Hb_001307_190 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_004712_190--Hb_005144_210 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_001863_160--Hb_005144_210 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001863_160--Hb_001191_080 Hb_003449_100 Hb_003449_100 Hb_000703_160--Hb_003449_100 Hb_074399_010 Hb_074399_010 Hb_000703_160--Hb_074399_010 Hb_007919_110 Hb_007919_110 Hb_000703_160--Hb_007919_110 Hb_000703_160--Hb_005144_210 Hb_161568_010 Hb_161568_010 Hb_000703_160--Hb_161568_010 Hb_000958_080 Hb_000958_080 Hb_000703_160--Hb_000958_080 Hb_004108_210 Hb_004108_210 Hb_005144_210--Hb_004108_210 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_005144_210--Hb_000098_150 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000086_430 Hb_000086_430 Hb_000009_220--Hb_000086_430 Hb_001307_190--Hb_000703_160 Hb_001307_190--Hb_000958_080 Hb_000617_310 Hb_000617_310 Hb_001307_190--Hb_000617_310 Hb_001307_190--Hb_005144_210 Hb_009449_060 Hb_009449_060 Hb_001307_190--Hb_009449_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.0808 68.4105 146.612 81.2613 28.0166 24.1896
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.4423 37.2595 19.3044 32.5867 31.6523

CAGE analysis