Hb_156635_020

Information

Type -
Description -
Location Contig156635: 11326-12788
Sequence    

Annotation

kegg
ID rcu:RCOM_0540790
description l-lactate dehydrogenase, putative (EC:1.1.1.27)
nr
ID XP_012069951.1
description PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
swissprot
ID P22989
description L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1
trembl
ID A0A067KUG8
description L-lactate dehydrogenase OS=Jatropha curcas GN=JCGZ_03382 PE=3 SV=1
Gene Ontology
ID GO:0005829
description l-lactate dehydrogenase b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13628: 11330-12717 , PASA_asmbl_13629: 11817-12175
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156635_020 0.0 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
2 Hb_005000_140 0.1001395355 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
3 Hb_152910_010 0.1027921262 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
4 Hb_009449_060 0.1039063965 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
5 Hb_011915_040 0.1053916305 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
6 Hb_003018_030 0.110137147 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
7 Hb_000958_080 0.1107844934 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004319_050 0.1109449497 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
9 Hb_000640_190 0.1115508135 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
10 Hb_000009_220 0.111660489 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
11 Hb_000260_770 0.1118942297 - - er lumen protein retaining receptor, putative [Ricinus communis]
12 Hb_073171_090 0.1119208355 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
13 Hb_000048_080 0.1120122119 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
14 Hb_000866_450 0.1125912544 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
15 Hb_172257_010 0.1127270208 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
16 Hb_005833_030 0.1141129712 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
17 Hb_001009_120 0.1145044431 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]
18 Hb_000300_550 0.1148563864 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
19 Hb_000890_160 0.1148593844 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
20 Hb_007163_060 0.1152763265 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_156635_020 Hb_156635_020 Hb_005000_140 Hb_005000_140 Hb_156635_020--Hb_005000_140 Hb_152910_010 Hb_152910_010 Hb_156635_020--Hb_152910_010 Hb_009449_060 Hb_009449_060 Hb_156635_020--Hb_009449_060 Hb_011915_040 Hb_011915_040 Hb_156635_020--Hb_011915_040 Hb_003018_030 Hb_003018_030 Hb_156635_020--Hb_003018_030 Hb_000958_080 Hb_000958_080 Hb_156635_020--Hb_000958_080 Hb_000012_210 Hb_000012_210 Hb_005000_140--Hb_000012_210 Hb_005000_140--Hb_152910_010 Hb_004837_220 Hb_004837_220 Hb_005000_140--Hb_004837_220 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_001085_300 Hb_001085_300 Hb_005000_140--Hb_001085_300 Hb_172257_010 Hb_172257_010 Hb_152910_010--Hb_172257_010 Hb_030545_030 Hb_030545_030 Hb_152910_010--Hb_030545_030 Hb_004319_050 Hb_004319_050 Hb_152910_010--Hb_004319_050 Hb_000302_170 Hb_000302_170 Hb_152910_010--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_152910_010--Hb_000300_550 Hb_000640_190 Hb_000640_190 Hb_152910_010--Hb_000640_190 Hb_004096_160 Hb_004096_160 Hb_009449_060--Hb_004096_160 Hb_002909_040 Hb_002909_040 Hb_009449_060--Hb_002909_040 Hb_009449_060--Hb_172257_010 Hb_009449_060--Hb_000958_080 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_000009_220 Hb_000009_220 Hb_011915_040--Hb_000009_220 Hb_000048_080 Hb_000048_080 Hb_011915_040--Hb_000048_080 Hb_000086_430 Hb_000086_430 Hb_011915_040--Hb_000086_430 Hb_004943_030 Hb_004943_030 Hb_011915_040--Hb_004943_030 Hb_003605_050 Hb_003605_050 Hb_011915_040--Hb_003605_050 Hb_000156_090 Hb_000156_090 Hb_003018_030--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_003018_030--Hb_002965_050 Hb_000866_140 Hb_000866_140 Hb_003018_030--Hb_000866_140 Hb_003018_030--Hb_004319_050 Hb_000034_110 Hb_000034_110 Hb_003018_030--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_003018_030--Hb_003428_090 Hb_000958_080--Hb_004096_160 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.0386 86.3132 109.617 72.9614 33.7852 25.5108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3872 18.0727 25.9121 39.3225 18.3747

CAGE analysis