Hb_000012_210

Information

Type -
Description -
Location Contig12: 307827-311290
Sequence    

Annotation

kegg
ID rcu:RCOM_1657030
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012077319.1
description PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
swissprot
ID Q94JQ3
description Serine hydroxymethyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=SHM3 PE=1 SV=2
trembl
ID A0A067KPA8
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_07691 PE=3 SV=1
Gene Ontology
ID GO:0016741
description serine hydroxymethyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_210 0.0 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
2 Hb_005000_140 0.1073557103 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
3 Hb_055488_020 0.1192656639 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
4 Hb_156635_020 0.1212161253 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
5 Hb_073171_090 0.1384560359 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
6 Hb_002311_140 0.1454470238 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
7 Hb_001259_110 0.146905458 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
8 Hb_001009_090 0.1509822311 - - CDK protein [Hevea brasiliensis]
9 Hb_000803_180 0.1514624768 - - hexokinase [Manihot esculenta]
10 Hb_001369_780 0.1536948259 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000866_450 0.1537465082 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_152910_010 0.1538729553 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
13 Hb_000784_080 0.1549481718 - - protein disulfide isomerase, putative [Ricinus communis]
14 Hb_000205_240 0.1565529581 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_003018_030 0.1592061544 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
16 Hb_004319_050 0.1596440859 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
17 Hb_003849_220 0.1613631186 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
18 Hb_000181_290 0.1620356097 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
19 Hb_005288_140 0.1621218534 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
20 Hb_005322_050 0.1623608906 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]

Gene co-expression network

sample Hb_000012_210 Hb_000012_210 Hb_005000_140 Hb_005000_140 Hb_000012_210--Hb_005000_140 Hb_055488_020 Hb_055488_020 Hb_000012_210--Hb_055488_020 Hb_156635_020 Hb_156635_020 Hb_000012_210--Hb_156635_020 Hb_073171_090 Hb_073171_090 Hb_000012_210--Hb_073171_090 Hb_002311_140 Hb_002311_140 Hb_000012_210--Hb_002311_140 Hb_001259_110 Hb_001259_110 Hb_000012_210--Hb_001259_110 Hb_005000_140--Hb_156635_020 Hb_152910_010 Hb_152910_010 Hb_005000_140--Hb_152910_010 Hb_004837_220 Hb_004837_220 Hb_005000_140--Hb_004837_220 Hb_005649_090 Hb_005649_090 Hb_005000_140--Hb_005649_090 Hb_001085_300 Hb_001085_300 Hb_005000_140--Hb_001085_300 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_003078_030 Hb_003078_030 Hb_055488_020--Hb_003078_030 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_005096_010 Hb_005096_010 Hb_055488_020--Hb_005096_010 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300 Hb_156635_020--Hb_152910_010 Hb_009449_060 Hb_009449_060 Hb_156635_020--Hb_009449_060 Hb_011915_040 Hb_011915_040 Hb_156635_020--Hb_011915_040 Hb_003018_030 Hb_003018_030 Hb_156635_020--Hb_003018_030 Hb_000958_080 Hb_000958_080 Hb_156635_020--Hb_000958_080 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_005322_050 Hb_005322_050 Hb_073171_090--Hb_005322_050 Hb_056987_010 Hb_056987_010 Hb_073171_090--Hb_056987_010 Hb_007163_060 Hb_007163_060 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_073171_090--Hb_000302_170 Hb_085364_010 Hb_085364_010 Hb_002311_140--Hb_085364_010 Hb_000803_180 Hb_000803_180 Hb_002311_140--Hb_000803_180 Hb_000671_060 Hb_000671_060 Hb_002311_140--Hb_000671_060 Hb_000261_280 Hb_000261_280 Hb_002311_140--Hb_000261_280 Hb_002311_140--Hb_003078_030 Hb_000163_230 Hb_000163_230 Hb_002311_140--Hb_000163_230 Hb_005403_010 Hb_005403_010 Hb_001259_110--Hb_005403_010 Hb_170077_010 Hb_170077_010 Hb_001259_110--Hb_170077_010 Hb_002903_140 Hb_002903_140 Hb_001259_110--Hb_002903_140 Hb_000700_060 Hb_000700_060 Hb_001259_110--Hb_000700_060 Hb_001221_090 Hb_001221_090 Hb_001259_110--Hb_001221_090 Hb_005288_140 Hb_005288_140 Hb_001259_110--Hb_005288_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.507515 1.36089 0.951581 1.03543 0.580738 0.198298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127879 0.301842 0.304288 0.512955 0.127131

CAGE analysis