Hb_011915_040

Information

Type -
Description -
Location Contig11915: 39732-40223
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15120g
description POPTRDRAFT_767147; hypothetical protein
nr
ID XP_002313649.2
description hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HQT3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011915_040 0.0 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
2 Hb_000009_220 0.1019027272 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
3 Hb_156635_020 0.1053916305 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
4 Hb_000048_080 0.1236360703 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
5 Hb_000086_430 0.1281841765 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
6 Hb_004943_030 0.1308523142 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
7 Hb_003605_050 0.1316160722 - - protein with unknown function [Ricinus communis]
8 Hb_004725_030 0.1351468227 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
9 Hb_006538_130 0.1392534005 - - Uncharacterized protein TCM_009867 [Theobroma cacao]
10 Hb_002311_480 0.1397690729 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
11 Hb_000579_190 0.1400826932 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
12 Hb_002600_130 0.1402548094 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
13 Hb_014231_020 0.1422163786 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
14 Hb_004635_030 0.1436035398 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
15 Hb_004236_030 0.1443009788 - - unknown [Lotus japonicus]
16 Hb_001621_110 0.1457178427 - - PREDICTED: uncharacterized protein LOC105647362 [Jatropha curcas]
17 Hb_012753_210 0.1465501269 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
18 Hb_004267_060 0.1469347956 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_009449_060 0.1494060792 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
20 Hb_001009_120 0.1499535348 - - PREDICTED: transcription factor GTE10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011915_040 Hb_011915_040 Hb_000009_220 Hb_000009_220 Hb_011915_040--Hb_000009_220 Hb_156635_020 Hb_156635_020 Hb_011915_040--Hb_156635_020 Hb_000048_080 Hb_000048_080 Hb_011915_040--Hb_000048_080 Hb_000086_430 Hb_000086_430 Hb_011915_040--Hb_000086_430 Hb_004943_030 Hb_004943_030 Hb_011915_040--Hb_004943_030 Hb_003605_050 Hb_003605_050 Hb_011915_040--Hb_003605_050 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000979_060 Hb_000979_060 Hb_000009_220--Hb_000979_060 Hb_000684_100 Hb_000684_100 Hb_000009_220--Hb_000684_100 Hb_000009_220--Hb_156635_020 Hb_000009_220--Hb_000086_430 Hb_005000_140 Hb_005000_140 Hb_156635_020--Hb_005000_140 Hb_152910_010 Hb_152910_010 Hb_156635_020--Hb_152910_010 Hb_009449_060 Hb_009449_060 Hb_156635_020--Hb_009449_060 Hb_003018_030 Hb_003018_030 Hb_156635_020--Hb_003018_030 Hb_000958_080 Hb_000958_080 Hb_156635_020--Hb_000958_080 Hb_000048_080--Hb_000086_430 Hb_006452_180 Hb_006452_180 Hb_000048_080--Hb_006452_180 Hb_000375_290 Hb_000375_290 Hb_000048_080--Hb_000375_290 Hb_010287_020 Hb_010287_020 Hb_000048_080--Hb_010287_020 Hb_003470_040 Hb_003470_040 Hb_000048_080--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000048_080--Hb_004319_050 Hb_001369_030 Hb_001369_030 Hb_000086_430--Hb_001369_030 Hb_001500_120 Hb_001500_120 Hb_000086_430--Hb_001500_120 Hb_001009_120 Hb_001009_120 Hb_000086_430--Hb_001009_120 Hb_001558_060 Hb_001558_060 Hb_000086_430--Hb_001558_060 Hb_004225_060 Hb_004225_060 Hb_000086_430--Hb_004225_060 Hb_060094_020 Hb_060094_020 Hb_004943_030--Hb_060094_020 Hb_004943_030--Hb_003605_050 Hb_008695_090 Hb_008695_090 Hb_004943_030--Hb_008695_090 Hb_001754_030 Hb_001754_030 Hb_004943_030--Hb_001754_030 Hb_000227_270 Hb_000227_270 Hb_004943_030--Hb_000227_270 Hb_023226_070 Hb_023226_070 Hb_004943_030--Hb_023226_070 Hb_003605_050--Hb_000227_270 Hb_003605_050--Hb_023226_070 Hb_000115_340 Hb_000115_340 Hb_003605_050--Hb_000115_340 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92322 12.0212 16.124 8.07202 2.09559 4.84807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.03234 2.16561 4.02211 3.60667 2.21859

CAGE analysis