Hb_001754_030

Information

Type -
Description -
Location Contig1754: 18620-22548
Sequence    

Annotation

kegg
ID rcu:RCOM_0681230
description sentrin/sumo-specific protease, putative (EC:3.6.1.5)
nr
ID XP_012083947.1
description PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
swissprot
ID Q94F30
description Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1
trembl
ID A0A067JYE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18883 PE=4 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin-like-specific protease esd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16783: 17856-22046 , PASA_asmbl_16785: 22211-22371 , PASA_asmbl_16786: 23115-28507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_030 0.0 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
2 Hb_000809_160 0.0634385831 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
3 Hb_002477_250 0.0641635919 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
4 Hb_023226_070 0.0651802458 - - conserved hypothetical protein [Ricinus communis]
5 Hb_060094_020 0.0653163208 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
6 Hb_032264_060 0.0673167296 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
7 Hb_000723_110 0.0682573434 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
8 Hb_000803_070 0.0712080896 - - PREDICTED: protein TRAUCO [Jatropha curcas]
9 Hb_010417_070 0.071262177 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
10 Hb_000861_080 0.0720036341 - - PREDICTED: protein ELC-like [Jatropha curcas]
11 Hb_002329_020 0.072599571 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
12 Hb_003927_040 0.0727130494 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
13 Hb_000094_090 0.0728407303 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
14 Hb_003894_120 0.0731830775 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
15 Hb_003866_080 0.0746114464 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
16 Hb_004943_030 0.0772756631 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
17 Hb_002085_030 0.0772947381 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_000739_180 0.0782135029 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
19 Hb_002267_140 0.0789390583 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
20 Hb_001225_030 0.0792437898 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_030 Hb_001754_030 Hb_000809_160 Hb_000809_160 Hb_001754_030--Hb_000809_160 Hb_002477_250 Hb_002477_250 Hb_001754_030--Hb_002477_250 Hb_023226_070 Hb_023226_070 Hb_001754_030--Hb_023226_070 Hb_060094_020 Hb_060094_020 Hb_001754_030--Hb_060094_020 Hb_032264_060 Hb_032264_060 Hb_001754_030--Hb_032264_060 Hb_000723_110 Hb_000723_110 Hb_001754_030--Hb_000723_110 Hb_000094_090 Hb_000094_090 Hb_000809_160--Hb_000094_090 Hb_000809_160--Hb_002477_250 Hb_031641_010 Hb_031641_010 Hb_000809_160--Hb_031641_010 Hb_000866_450 Hb_000866_450 Hb_000809_160--Hb_000866_450 Hb_000120_910 Hb_000120_910 Hb_000809_160--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000809_160--Hb_000363_120 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_001135_120 Hb_001135_120 Hb_002477_250--Hb_001135_120 Hb_023226_070--Hb_060094_020 Hb_023226_070--Hb_000094_090 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_000645_170 Hb_000645_170 Hb_060094_020--Hb_000645_170 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_000803_070 Hb_000803_070 Hb_032264_060--Hb_000803_070 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_032264_060--Hb_003927_040 Hb_001140_030 Hb_001140_030 Hb_032264_060--Hb_001140_030 Hb_001751_140 Hb_001751_140 Hb_032264_060--Hb_001751_140 Hb_007017_070 Hb_007017_070 Hb_000723_110--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000723_110--Hb_000926_010 Hb_000723_110--Hb_000809_160 Hb_004410_070 Hb_004410_070 Hb_000723_110--Hb_004410_070 Hb_000723_110--Hb_000094_090 Hb_000373_230 Hb_000373_230 Hb_000723_110--Hb_000373_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3344 17.8605 13.2929 9.19935 8.37559 8.81047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6134 6.61513 7.42571 6.83167 7.85999

CAGE analysis