Hb_003470_030

Information

Type -
Description -
Location Contig3470: 28982-31603
Sequence    

Annotation

kegg
ID rcu:RCOM_0342820
description zinc finger protein, putative
nr
ID XP_012080828.1
description PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067KFL5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16194 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase cip8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36258: 29389-31774 , PASA_asmbl_36259: 30148-31833 , PASA_asmbl_36260: 29548-29801 , PASA_asmbl_36262: 29818-29992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003470_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
2 Hb_002477_250 0.0654075285 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
3 Hb_002081_120 0.0688684943 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
4 Hb_000926_010 0.0710098805 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
5 Hb_000264_070 0.0799722974 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
6 Hb_002903_140 0.0818642944 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
7 Hb_096819_010 0.0837026567 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
8 Hb_000227_310 0.0846645818 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
9 Hb_000046_070 0.0867573071 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_001231_090 0.0869708149 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
11 Hb_010661_020 0.0871448809 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
12 Hb_000264_080 0.0881204163 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
13 Hb_007017_070 0.088413978 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
14 Hb_000780_170 0.0887935152 - - PREDICTED: OBERON-like protein [Jatropha curcas]
15 Hb_002282_060 0.0889805809 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
16 Hb_000069_130 0.0891455735 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
17 Hb_005542_050 0.0897104357 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
18 Hb_001754_030 0.0898619801 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
19 Hb_001674_040 0.089895217 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
20 Hb_001489_100 0.0905110068 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003470_030 Hb_003470_030 Hb_002477_250 Hb_002477_250 Hb_003470_030--Hb_002477_250 Hb_002081_120 Hb_002081_120 Hb_003470_030--Hb_002081_120 Hb_000926_010 Hb_000926_010 Hb_003470_030--Hb_000926_010 Hb_000264_070 Hb_000264_070 Hb_003470_030--Hb_000264_070 Hb_002903_140 Hb_002903_140 Hb_003470_030--Hb_002903_140 Hb_096819_010 Hb_096819_010 Hb_003470_030--Hb_096819_010 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_002477_250--Hb_000264_070 Hb_001135_120 Hb_001135_120 Hb_002477_250--Hb_001135_120 Hb_000046_070 Hb_000046_070 Hb_002081_120--Hb_000046_070 Hb_002666_080 Hb_002666_080 Hb_002081_120--Hb_002666_080 Hb_001489_100 Hb_001489_100 Hb_002081_120--Hb_001489_100 Hb_001033_050 Hb_001033_050 Hb_002081_120--Hb_001033_050 Hb_002081_120--Hb_002477_250 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_000023_320 Hb_000023_320 Hb_000926_010--Hb_000023_320 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_004032_230 Hb_004032_230 Hb_000264_070--Hb_004032_230 Hb_000264_070--Hb_000023_320 Hb_001405_190 Hb_001405_190 Hb_000264_070--Hb_001405_190 Hb_001231_090 Hb_001231_090 Hb_000264_070--Hb_001231_090 Hb_102438_030 Hb_102438_030 Hb_000264_070--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_002903_140--Hb_030545_030 Hb_008165_030 Hb_008165_030 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_007017_070 Hb_007017_070 Hb_002903_140--Hb_007017_070 Hb_002903_140--Hb_096819_010 Hb_096819_010--Hb_030545_030 Hb_096819_010--Hb_008165_030 Hb_000958_150 Hb_000958_150 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
171.921 287.603 164.514 148.622 138.819 126.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.1196 47.3842 62.6662 91.7475 104.666

CAGE analysis