Hb_030545_030

Information

Type -
Description -
Location Contig30545: 44044-51691
Sequence    

Annotation

kegg
ID rcu:RCOM_1504690
description hypothetical protein
nr
ID XP_012090620.1
description PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
swissprot
ID Q1LV22
description Protein FAM214A OS=Danio rerio GN=fam214a PE=2 SV=2
trembl
ID A0A067JRD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26391 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32231: 44183-51370 , PASA_asmbl_32232: 46154-46274 , PASA_asmbl_32233: 50714-51370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030545_030 0.0 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
2 Hb_002903_140 0.0494665715 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
3 Hb_102438_030 0.0525863131 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
4 Hb_000227_310 0.057753405 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
5 Hb_007017_070 0.0579962681 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
6 Hb_008165_030 0.0621995283 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
7 Hb_096819_010 0.0639212478 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
8 Hb_000958_150 0.0672376309 - - Actin, putative [Ricinus communis]
9 Hb_152910_010 0.0678405096 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
10 Hb_004526_010 0.0727947871 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
11 Hb_004319_050 0.0768528218 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
12 Hb_003992_180 0.0769264531 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
13 Hb_000302_170 0.0796045454 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
14 Hb_004032_230 0.0797520517 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_003895_020 0.0811578231 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
16 Hb_000102_050 0.0814368678 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
17 Hb_000866_450 0.0847558019 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_010287_030 0.0848736593 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000723_110 0.0866260772 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
20 Hb_000264_070 0.0867289525 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]

Gene co-expression network

sample Hb_030545_030 Hb_030545_030 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_102438_030 Hb_102438_030 Hb_030545_030--Hb_102438_030 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_007017_070 Hb_007017_070 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_002903_140--Hb_008165_030 Hb_000977_300 Hb_000977_300 Hb_002903_140--Hb_000977_300 Hb_004319_050 Hb_004319_050 Hb_002903_140--Hb_004319_050 Hb_002903_140--Hb_007017_070 Hb_002903_140--Hb_096819_010 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_000227_310--Hb_007017_070 Hb_000926_010 Hb_000926_010 Hb_000227_310--Hb_000926_010 Hb_000264_080 Hb_000264_080 Hb_000227_310--Hb_000264_080 Hb_007576_220 Hb_007576_220 Hb_000227_310--Hb_007576_220 Hb_004195_120 Hb_004195_120 Hb_000227_310--Hb_004195_120 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_001674_040 Hb_001674_040 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_008165_030--Hb_096819_010 Hb_008165_030--Hb_004032_230 Hb_096819_010--Hb_000958_150 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.36236 25.3447 19.1955 11.4029 11.1575 10.849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.88437 4.49467 4.11736 10.0189 7.92731

CAGE analysis