Hb_000139_320

Information

Type -
Description -
Location Contig139: 349071-352228
Sequence    

Annotation

kegg
ID rcu:RCOM_0913720
description protein binding protein, putative
nr
ID XP_012069557.1
description PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
swissprot
ID Q4TU14
description E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1
trembl
ID A0A067KV90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02129 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rhf1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10656: 349295-352094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000139_320 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
2 Hb_000340_030 0.0486623039 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
3 Hb_001723_010 0.0558712158 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]
4 Hb_003711_010 0.0640108037 - - isopropylmalate synthase, putative [Ricinus communis]
5 Hb_026980_020 0.0664983609 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
6 Hb_102438_030 0.0699379242 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_000174_150 0.0704085691 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
8 Hb_004517_020 0.0713956069 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
9 Hb_000513_090 0.072982452 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
10 Hb_031641_010 0.0771475003 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000940_200 0.0771791807 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
12 Hb_000977_300 0.0782061755 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
13 Hb_000120_910 0.0785003026 - - plant ubiquilin, putative [Ricinus communis]
14 Hb_008948_140 0.0785646706 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
15 Hb_000260_770 0.0791417674 - - er lumen protein retaining receptor, putative [Ricinus communis]
16 Hb_000684_510 0.0792236753 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
17 Hb_000529_060 0.0803773473 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
18 Hb_000862_040 0.0810522293 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_000069_130 0.0817506565 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
20 Hb_002284_170 0.0817652907 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]

Gene co-expression network

sample Hb_000139_320 Hb_000139_320 Hb_000340_030 Hb_000340_030 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_102438_030 Hb_102438_030 Hb_000139_320--Hb_102438_030 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150 Hb_000340_030--Hb_001723_010 Hb_031641_010 Hb_031641_010 Hb_000340_030--Hb_031641_010 Hb_002849_170 Hb_002849_170 Hb_000340_030--Hb_002849_170 Hb_000340_030--Hb_003711_010 Hb_000529_060 Hb_000529_060 Hb_000340_030--Hb_000529_060 Hb_004517_020 Hb_004517_020 Hb_001723_010--Hb_004517_020 Hb_001723_010--Hb_003711_010 Hb_000373_170 Hb_000373_170 Hb_001723_010--Hb_000373_170 Hb_000120_910 Hb_000120_910 Hb_001723_010--Hb_000120_910 Hb_000684_510 Hb_000684_510 Hb_003711_010--Hb_000684_510 Hb_003711_010--Hb_000373_170 Hb_000661_120 Hb_000661_120 Hb_003711_010--Hb_000661_120 Hb_154580_010 Hb_154580_010 Hb_026980_020--Hb_154580_010 Hb_026980_020--Hb_000340_030 Hb_026980_020--Hb_003711_010 Hb_003849_140 Hb_003849_140 Hb_026980_020--Hb_003849_140 Hb_005542_050 Hb_005542_050 Hb_026980_020--Hb_005542_050 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000977_300 Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_001171_030 Hb_001171_030 Hb_000174_150--Hb_001171_030 Hb_000174_150--Hb_000340_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.57411 20.0886 16.5027 12.5133 10.3341 9.81903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.77693 6.71091 5.33759 14.5574 6.71938

CAGE analysis