Hb_000529_060

Information

Type -
Description -
Location Contig529: 135622-143807
Sequence    

Annotation

kegg
ID rcu:RCOM_0070070
description cysteine-type endopeptidase, putative (EC:3.1.2.15)
nr
ID XP_012081650.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
swissprot
ID Q9FKP5
description Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 PE=2 SV=1
trembl
ID A0A067K0W9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18687 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47230: 135772-140103 , PASA_asmbl_47233: 142845-143673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_060 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
2 Hb_000977_300 0.0456294295 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
3 Hb_000996_020 0.0525549697 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
4 Hb_000046_600 0.0528366469 - - PREDICTED: cullin-1-like [Jatropha curcas]
5 Hb_005333_140 0.0538103866 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
6 Hb_011972_020 0.0573575289 - - protein binding protein, putative [Ricinus communis]
7 Hb_001171_030 0.0589643721 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
8 Hb_001584_350 0.0591144296 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
9 Hb_031641_010 0.0613354856 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000340_030 0.0613748991 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
11 Hb_000120_910 0.0616482758 - - plant ubiquilin, putative [Ricinus communis]
12 Hb_000445_060 0.0619803725 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
13 Hb_004517_020 0.0620609042 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
14 Hb_001723_140 0.063320678 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
15 Hb_000189_630 0.064077414 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
16 Hb_002811_040 0.0644527359 - - 5'->3' exoribonuclease, putative [Ricinus communis]
17 Hb_002461_020 0.0644706747 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
18 Hb_002849_170 0.0656640509 - - PREDICTED: uncharacterized protein LOC105642955 isoform X1 [Jatropha curcas]
19 Hb_004429_010 0.0657118105 - - calcineurin-like phosphoesterase [Manihot esculenta]
20 Hb_000661_120 0.0663608029 - - cap binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000529_060 Hb_000529_060 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_004517_020 Hb_004517_020 Hb_000977_300--Hb_004517_020 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000977_300--Hb_001171_030 Hb_000189_630 Hb_000189_630 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_002461_020 Hb_002461_020 Hb_000996_020--Hb_002461_020 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_000996_020--Hb_005333_140 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_000046_600--Hb_005333_140 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000046_600--Hb_000977_300 Hb_005333_140--Hb_002461_020 Hb_005333_140--Hb_023344_140 Hb_005333_140--Hb_000189_630 Hb_055235_020 Hb_055235_020 Hb_011972_020--Hb_055235_020 Hb_000457_230 Hb_000457_230 Hb_011972_020--Hb_000457_230 Hb_002014_040 Hb_002014_040 Hb_011972_020--Hb_002014_040 Hb_000238_040 Hb_000238_040 Hb_011972_020--Hb_000238_040 Hb_098209_010 Hb_098209_010 Hb_011972_020--Hb_098209_010 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_001723_140 Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_001171_030--Hb_000189_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57722 7.92988 7.6344 5.7684 4.52371 4.21376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32561 2.46495 2.42561 5.25634 5.19798

CAGE analysis