Hb_001723_140

Information

Type -
Description -
Location Contig1723: 126731-138123
Sequence    

Annotation

kegg
ID pop:POPTR_0010s16250g
description POPTRDRAFT_724002; hypothetical protein
nr
ID XP_012084165.1
description PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
swissprot
ID F4J738
description Importin beta-like SAD2 homolog OS=Arabidopsis thaliana GN=At3g59020 PE=1 SV=1
trembl
ID A0A067JVI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19066 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin beta-like sad2 homolog isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16275: 126448-150170 , PASA_asmbl_16276: 126842-150143 , PASA_asmbl_16277: 128323-128841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_140 0.0 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
2 Hb_001171_030 0.0497508664 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
3 Hb_013358_070 0.0521294957 - - protein with unknown function [Ricinus communis]
4 Hb_001584_350 0.0566235143 - - hypothetical protein JCGZ_23178 [Jatropha curcas]
5 Hb_003142_040 0.059541086 - - Sf3a3 [Gossypium arboreum]
6 Hb_000027_050 0.0624918338 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
7 Hb_000529_060 0.063320678 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
8 Hb_000523_080 0.0636529469 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
9 Hb_128548_010 0.06435936 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000879_040 0.0661262428 - - PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type [Jatropha curcas]
11 Hb_001674_040 0.0676210236 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
12 Hb_003943_020 0.0679133259 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
13 Hb_002045_250 0.0680500768 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
14 Hb_004724_370 0.0681333845 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
15 Hb_002968_070 0.0689534332 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
16 Hb_098209_010 0.0691000121 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
17 Hb_000184_150 0.0745189309 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
18 Hb_000977_300 0.0753281502 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
19 Hb_011972_020 0.0761448527 - - protein binding protein, putative [Ricinus communis]
20 Hb_004429_010 0.076281868 - - calcineurin-like phosphoesterase [Manihot esculenta]

Gene co-expression network

sample Hb_001723_140 Hb_001723_140 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_013358_070 Hb_013358_070 Hb_001723_140--Hb_013358_070 Hb_001584_350 Hb_001584_350 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_000977_300 Hb_000977_300 Hb_001171_030--Hb_000977_300 Hb_001171_030--Hb_000529_060 Hb_000523_080 Hb_000523_080 Hb_013358_070--Hb_000523_080 Hb_000175_410 Hb_000175_410 Hb_013358_070--Hb_000175_410 Hb_003943_020 Hb_003943_020 Hb_013358_070--Hb_003943_020 Hb_009771_110 Hb_009771_110 Hb_013358_070--Hb_009771_110 Hb_000318_120 Hb_000318_120 Hb_013358_070--Hb_000318_120 Hb_001584_350--Hb_000529_060 Hb_001584_350--Hb_001171_030 Hb_000174_150 Hb_000174_150 Hb_001584_350--Hb_000174_150 Hb_128548_010 Hb_128548_010 Hb_001584_350--Hb_128548_010 Hb_001584_350--Hb_000977_300 Hb_003142_040--Hb_002968_070 Hb_001953_120 Hb_001953_120 Hb_003142_040--Hb_001953_120 Hb_001221_090 Hb_001221_090 Hb_003142_040--Hb_001221_090 Hb_003142_040--Hb_000189_630 Hb_000879_040 Hb_000879_040 Hb_000027_050--Hb_000879_040 Hb_003943_010 Hb_003943_010 Hb_000027_050--Hb_003943_010 Hb_001935_160 Hb_001935_160 Hb_000027_050--Hb_001935_160 Hb_000252_050 Hb_000252_050 Hb_000027_050--Hb_000252_050 Hb_001268_280 Hb_001268_280 Hb_000027_050--Hb_001268_280 Hb_000529_060--Hb_000977_300 Hb_000996_020 Hb_000996_020 Hb_000529_060--Hb_000996_020 Hb_000046_600 Hb_000046_600 Hb_000529_060--Hb_000046_600 Hb_005333_140 Hb_005333_140 Hb_000529_060--Hb_005333_140 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8932 15.731 14.7785 9.71496 9.97212 11.566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.47572 3.94388 4.37686 13.054 11.4591

CAGE analysis