Hb_000523_080

Information

Type -
Description -
Location Contig523: 122618-128750
Sequence    

Annotation

kegg
ID rcu:RCOM_0763720
description hypothetical protein
nr
ID XP_012074688.1
description PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
swissprot
ID O62703
description Beta-catenin-like protein 1 OS=Bos taurus GN=CTNNBL1 PE=2 SV=3
trembl
ID B9SJM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0763720 PE=4 SV=1
Gene Ontology
ID GO:0042732
description beta-catenin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46900: 122677-128553 , PASA_asmbl_46901: 123970-124235
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_080 0.0 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
2 Hb_128548_010 0.0456639289 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003943_020 0.0460042887 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
4 Hb_007929_080 0.0578480331 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
5 Hb_009771_110 0.0614907625 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
6 Hb_001723_140 0.0636529469 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
7 Hb_013358_070 0.0653833793 - - protein with unknown function [Ricinus communis]
8 Hb_007044_110 0.0675112801 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000318_120 0.0683358434 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
10 Hb_000175_410 0.0689979124 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
11 Hb_000457_230 0.0693068345 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
12 Hb_006618_090 0.069395013 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
13 Hb_000563_130 0.07006213 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
14 Hb_055235_020 0.0705624529 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
15 Hb_002571_030 0.0705882766 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
16 Hb_001377_110 0.0707867595 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
17 Hb_003186_020 0.0713255084 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
18 Hb_002701_150 0.0726663463 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
19 Hb_000836_410 0.0727099417 - - sec10, putative [Ricinus communis]
20 Hb_011972_020 0.0731745809 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000523_080 Hb_000523_080 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_001723_140 Hb_001723_140 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_128548_010--Hb_001723_140 Hb_008568_020 Hb_008568_020 Hb_128548_010--Hb_008568_020 Hb_128548_010--Hb_003943_020 Hb_001584_350 Hb_001584_350 Hb_128548_010--Hb_001584_350 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_005333_160 Hb_005333_160 Hb_003943_020--Hb_005333_160 Hb_003943_020--Hb_013358_070 Hb_003943_020--Hb_001723_140 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_007929_080--Hb_009771_110 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_002571_030 Hb_001171_030 Hb_001171_030 Hb_001723_140--Hb_001171_030 Hb_001723_140--Hb_013358_070 Hb_001723_140--Hb_001584_350 Hb_003142_040 Hb_003142_040 Hb_001723_140--Hb_003142_040 Hb_000027_050 Hb_000027_050 Hb_001723_140--Hb_000027_050 Hb_000529_060 Hb_000529_060 Hb_001723_140--Hb_000529_060 Hb_000175_410 Hb_000175_410 Hb_013358_070--Hb_000175_410 Hb_013358_070--Hb_009771_110 Hb_013358_070--Hb_000318_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4722 24.1014 28.8734 15.8115 24.8864 21.4174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.82499 10.5193 9.20549 23.9995 22.1973

CAGE analysis