Hb_001377_110

Information

Type -
Description -
Location Contig1377: 89115-94325
Sequence    

Annotation

kegg
ID rcu:RCOM_0719160
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012083226.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
swissprot
ID Q9FFQ1
description DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis thaliana GN=RH31 PE=2 SV=2
trembl
ID A0A067K887
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14271 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 31-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10383: 89169-94261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_110 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
2 Hb_098209_010 0.0629997191 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
3 Hb_009771_110 0.0631729577 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
4 Hb_000457_230 0.0647625157 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_007929_080 0.0649091769 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
6 Hb_003186_020 0.0677887159 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
7 Hb_001021_220 0.069054735 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
8 Hb_001405_190 0.0702152447 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
9 Hb_001268_280 0.0705704082 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000523_080 0.0707867595 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
11 Hb_002374_260 0.0712572246 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
12 Hb_032202_080 0.0770424518 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
13 Hb_002615_120 0.0773310738 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
14 Hb_160459_040 0.0774315475 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
15 Hb_000836_410 0.0789584141 - - sec10, putative [Ricinus communis]
16 Hb_001005_030 0.0792137636 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
17 Hb_012215_010 0.0798935259 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
18 Hb_005053_010 0.0801054393 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
19 Hb_000115_280 0.0810238695 - - PREDICTED: glutamine--tRNA ligase [Jatropha curcas]
20 Hb_000230_090 0.0814519339 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_110 Hb_001377_110 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_098209_010--Hb_000457_230 Hb_011972_020 Hb_011972_020 Hb_098209_010--Hb_011972_020 Hb_001723_140 Hb_001723_140 Hb_098209_010--Hb_001723_140 Hb_005895_010 Hb_005895_010 Hb_098209_010--Hb_005895_010 Hb_002014_040 Hb_002014_040 Hb_098209_010--Hb_002014_040 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_007044_110 Hb_007044_110 Hb_000457_230--Hb_007044_110 Hb_000205_260 Hb_000205_260 Hb_000457_230--Hb_000205_260 Hb_000457_230--Hb_003186_020 Hb_000457_230--Hb_011972_020 Hb_005523_020 Hb_005523_020 Hb_000457_230--Hb_005523_020 Hb_032202_080 Hb_032202_080 Hb_000457_230--Hb_032202_080 Hb_007929_080--Hb_002571_030 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_007929_080--Hb_006618_090 Hb_000373_080 Hb_000373_080 Hb_003186_020--Hb_000373_080 Hb_000175_410 Hb_000175_410 Hb_003186_020--Hb_000175_410 Hb_031284_010 Hb_031284_010 Hb_003186_020--Hb_031284_010 Hb_000214_050 Hb_000214_050 Hb_003186_020--Hb_000214_050 Hb_000115_280 Hb_000115_280 Hb_003186_020--Hb_000115_280 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_029904_020 Hb_029904_020 Hb_001021_220--Hb_029904_020 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.7829 31.0166 41.4655 23.7263 31.4059 39.6659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.627 13.551 15.9647 23.6354 35.5011

CAGE analysis