Hb_029904_020

Information

Type -
Description -
Location Contig29904: 13967-19088
Sequence    

Annotation

kegg
ID rcu:RCOM_0895630
description Katanin p60 ATPase-containing subunit, putative (EC:3.6.4.3)
nr
ID KDP37171.1
description hypothetical protein JCGZ_06227 [Jatropha curcas]
swissprot
ID Q9SEX2
description Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1
trembl
ID A0A067KLP8
description Katanin p60 ATPase-containing subunit A1 OS=Jatropha curcas GN=KATNA1 PE=3 SV=1
Gene Ontology
ID GO:0005737
description katanin p60 atpase-containing subunit a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31264: 13883-19067 , PASA_asmbl_31265: 19998-26421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029904_020 0.0 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
2 Hb_001021_220 0.079950613 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
3 Hb_000208_260 0.0807765475 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
4 Hb_012215_010 0.0827332853 - - PREDICTED: YTH domain-containing family protein 1 [Populus euphratica]
5 Hb_010150_020 0.0839222014 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
6 Hb_001948_130 0.0852994988 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
7 Hb_003549_090 0.0868962253 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
8 Hb_009296_010 0.0880624548 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
9 Hb_001396_280 0.0889234924 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
10 Hb_160459_040 0.0910742234 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
11 Hb_003010_020 0.0912267955 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002398_030 0.0938964256 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000152_260 0.0945221062 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
14 Hb_028308_010 0.09536235 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
15 Hb_000031_280 0.0961962794 - - -
16 Hb_010925_020 0.096292515 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
17 Hb_000139_230 0.096464857 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
18 Hb_000990_090 0.0970833337 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
19 Hb_000107_210 0.0981234841 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
20 Hb_000879_160 0.0982617608 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_029904_020 Hb_029904_020 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090 Hb_001377_110 Hb_001377_110 Hb_001021_220--Hb_001377_110 Hb_001789_190 Hb_001789_190 Hb_001021_220--Hb_001789_190 Hb_000139_230 Hb_000139_230 Hb_001021_220--Hb_000139_230 Hb_001268_280 Hb_001268_280 Hb_001021_220--Hb_001268_280 Hb_132840_110 Hb_132840_110 Hb_001021_220--Hb_132840_110 Hb_009049_020 Hb_009049_020 Hb_000208_260--Hb_009049_020 Hb_058999_030 Hb_058999_030 Hb_000208_260--Hb_058999_030 Hb_002398_030 Hb_002398_030 Hb_000208_260--Hb_002398_030 Hb_001188_060 Hb_001188_060 Hb_000208_260--Hb_001188_060 Hb_002248_110 Hb_002248_110 Hb_000208_260--Hb_002248_110 Hb_002942_060 Hb_002942_060 Hb_000208_260--Hb_002942_060 Hb_002539_110 Hb_002539_110 Hb_012215_010--Hb_002539_110 Hb_010272_010 Hb_010272_010 Hb_012215_010--Hb_010272_010 Hb_000640_070 Hb_000640_070 Hb_012215_010--Hb_000640_070 Hb_000362_170 Hb_000362_170 Hb_012215_010--Hb_000362_170 Hb_000664_110 Hb_000664_110 Hb_012215_010--Hb_000664_110 Hb_001005_030 Hb_001005_030 Hb_012215_010--Hb_001005_030 Hb_000035_110 Hb_000035_110 Hb_010150_020--Hb_000035_110 Hb_001377_310 Hb_001377_310 Hb_010150_020--Hb_001377_310 Hb_003688_090 Hb_003688_090 Hb_010150_020--Hb_003688_090 Hb_021374_010 Hb_021374_010 Hb_010150_020--Hb_021374_010 Hb_004020_040 Hb_004020_040 Hb_010150_020--Hb_004020_040 Hb_017295_010 Hb_017295_010 Hb_001948_130--Hb_017295_010 Hb_001948_130--Hb_000208_260 Hb_001109_060 Hb_001109_060 Hb_001948_130--Hb_001109_060 Hb_000107_210 Hb_000107_210 Hb_001948_130--Hb_000107_210 Hb_000008_220 Hb_000008_220 Hb_001948_130--Hb_000008_220 Hb_003549_090--Hb_002398_030 Hb_011310_130 Hb_011310_130 Hb_003549_090--Hb_011310_130 Hb_000777_050 Hb_000777_050 Hb_003549_090--Hb_000777_050 Hb_000007_280 Hb_000007_280 Hb_003549_090--Hb_000007_280 Hb_011310_210 Hb_011310_210 Hb_003549_090--Hb_011310_210 Hb_003549_090--Hb_058999_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1832 17.9431 21.9826 26.0583 23.8194 40.1643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6706 7.0874 10.0316 17.0854 23.5897

CAGE analysis