Hb_000008_220

Information

Type transcription factor
Description TF Family: ARF
Location Contig8: 305799-310491
Sequence    

Annotation

kegg
ID rcu:RCOM_0034710
description Auxin response factor, putative
nr
ID XP_012064809.1
description PREDICTED: auxin response factor 10 [Jatropha curcas]
swissprot
ID Q653H7
description Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1
trembl
ID A0A067L6E1
description Auxin response factor OS=Jatropha curcas GN=JCGZ_05508 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58673: 306069-307234 , PASA_asmbl_58675: 307356-309116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_220 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
2 Hb_002876_320 0.0721058951 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
3 Hb_001948_130 0.0855150415 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
4 Hb_000009_400 0.0948894664 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
5 Hb_005000_320 0.0957842281 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
6 Hb_058999_030 0.0986728555 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
7 Hb_000760_020 0.1001661148 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
8 Hb_033642_030 0.1002533284 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
9 Hb_000061_240 0.1009898516 - - kinase, putative [Ricinus communis]
10 Hb_135831_010 0.1029682692 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
11 Hb_000664_110 0.1031230195 - - PREDICTED: monoglyceride lipase [Jatropha curcas]
12 Hb_002398_030 0.1051723645 - - amino acid binding protein, putative [Ricinus communis]
13 Hb_000617_010 0.1052149084 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
14 Hb_001635_160 0.1053844878 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
15 Hb_008120_030 0.1057804339 - - PREDICTED: uncharacterized protein LOC101216675 [Cucumis sativus]
16 Hb_000107_210 0.107734636 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
17 Hb_001195_560 0.1079506498 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
18 Hb_005276_060 0.1085328125 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
19 Hb_000494_080 0.1091808112 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
20 Hb_001135_130 0.1111543899 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000008_220 Hb_000008_220 Hb_002876_320 Hb_002876_320 Hb_000008_220--Hb_002876_320 Hb_001948_130 Hb_001948_130 Hb_000008_220--Hb_001948_130 Hb_000009_400 Hb_000009_400 Hb_000008_220--Hb_000009_400 Hb_005000_320 Hb_005000_320 Hb_000008_220--Hb_005000_320 Hb_058999_030 Hb_058999_030 Hb_000008_220--Hb_058999_030 Hb_000760_020 Hb_000760_020 Hb_000008_220--Hb_000760_020 Hb_002398_030 Hb_002398_030 Hb_002876_320--Hb_002398_030 Hb_008120_030 Hb_008120_030 Hb_002876_320--Hb_008120_030 Hb_002876_320--Hb_000009_400 Hb_033642_030 Hb_033642_030 Hb_002876_320--Hb_033642_030 Hb_000445_050 Hb_000445_050 Hb_002876_320--Hb_000445_050 Hb_017295_010 Hb_017295_010 Hb_001948_130--Hb_017295_010 Hb_000208_260 Hb_000208_260 Hb_001948_130--Hb_000208_260 Hb_001109_060 Hb_001109_060 Hb_001948_130--Hb_001109_060 Hb_000107_210 Hb_000107_210 Hb_001948_130--Hb_000107_210 Hb_029904_020 Hb_029904_020 Hb_001948_130--Hb_029904_020 Hb_005276_060 Hb_005276_060 Hb_000009_400--Hb_005276_060 Hb_000046_570 Hb_000046_570 Hb_000009_400--Hb_000046_570 Hb_000322_070 Hb_000322_070 Hb_000009_400--Hb_000322_070 Hb_003929_170 Hb_003929_170 Hb_000009_400--Hb_003929_170 Hb_005797_010 Hb_005797_010 Hb_000009_400--Hb_005797_010 Hb_012322_020 Hb_012322_020 Hb_000009_400--Hb_012322_020 Hb_000309_040 Hb_000309_040 Hb_005000_320--Hb_000309_040 Hb_000933_010 Hb_000933_010 Hb_005000_320--Hb_000933_010 Hb_002235_210 Hb_002235_210 Hb_005000_320--Hb_002235_210 Hb_001077_030 Hb_001077_030 Hb_005000_320--Hb_001077_030 Hb_001051_080 Hb_001051_080 Hb_005000_320--Hb_001051_080 Hb_000011_190 Hb_000011_190 Hb_005000_320--Hb_000011_190 Hb_058999_030--Hb_002398_030 Hb_002248_110 Hb_002248_110 Hb_058999_030--Hb_002248_110 Hb_017700_010 Hb_017700_010 Hb_058999_030--Hb_017700_010 Hb_003549_090 Hb_003549_090 Hb_058999_030--Hb_003549_090 Hb_058999_030--Hb_000208_260 Hb_007592_030 Hb_007592_030 Hb_058999_030--Hb_007592_030 Hb_014361_150 Hb_014361_150 Hb_000760_020--Hb_014361_150 Hb_000760_020--Hb_001077_030 Hb_000525_100 Hb_000525_100 Hb_000760_020--Hb_000525_100 Hb_144166_010 Hb_144166_010 Hb_000760_020--Hb_144166_010 Hb_000291_060 Hb_000291_060 Hb_000760_020--Hb_000291_060 Hb_003096_060 Hb_003096_060 Hb_000760_020--Hb_003096_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.525 20.9772 18.3793 31.1727 21.4258 27.9636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2116 8.65405 15.8014 8.04151 14.7441

CAGE analysis