Hb_000760_020

Information

Type -
Description -
Location Contig760: 19487-20716
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011052mg
description hypothetical protein
nr
ID XP_012079095.1
description PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
swissprot
ID Q5ZIR9
description E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1
trembl
ID A0A067KA13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12274 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rnf185-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57269: 19572-21129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000760_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
2 Hb_014361_150 0.0820093111 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
3 Hb_001077_030 0.0862603678 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
4 Hb_000525_100 0.086924603 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
5 Hb_144166_010 0.0912623856 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_000291_060 0.0918202723 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
7 Hb_003096_060 0.0921834943 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
8 Hb_009270_040 0.0947786254 - - -
9 Hb_000096_120 0.095589872 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
10 Hb_003994_140 0.0969184319 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002965_040 0.0978139337 - - drought-responsive family protein [Populus trichocarpa]
12 Hb_000718_070 0.0982577519 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000008_220 0.1001661148 transcription factor TF Family: ARF PREDICTED: auxin response factor 10 [Jatropha curcas]
14 Hb_008226_090 0.101609571 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
15 Hb_000042_340 0.1016514992 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
16 Hb_000566_200 0.1020199725 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
17 Hb_000608_110 0.1025232881 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 [Jatropha curcas]
18 Hb_006588_070 0.1034752483 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
19 Hb_000567_190 0.1037485862 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
20 Hb_000200_380 0.1046020563 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000760_020 Hb_000760_020 Hb_014361_150 Hb_014361_150 Hb_000760_020--Hb_014361_150 Hb_001077_030 Hb_001077_030 Hb_000760_020--Hb_001077_030 Hb_000525_100 Hb_000525_100 Hb_000760_020--Hb_000525_100 Hb_144166_010 Hb_144166_010 Hb_000760_020--Hb_144166_010 Hb_000291_060 Hb_000291_060 Hb_000760_020--Hb_000291_060 Hb_003096_060 Hb_003096_060 Hb_000760_020--Hb_003096_060 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_000718_070 Hb_000718_070 Hb_001077_030--Hb_000718_070 Hb_002311_070 Hb_002311_070 Hb_001077_030--Hb_002311_070 Hb_001077_030--Hb_003096_060 Hb_003680_230 Hb_003680_230 Hb_001077_030--Hb_003680_230 Hb_001135_120 Hb_001135_120 Hb_001077_030--Hb_001135_120 Hb_000922_020 Hb_000922_020 Hb_001077_030--Hb_000922_020 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_000525_100--Hb_003096_060 Hb_032202_080 Hb_032202_080 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_000982_050 Hb_000982_050 Hb_144166_010--Hb_000982_050 Hb_005365_020 Hb_005365_020 Hb_144166_010--Hb_005365_020 Hb_000085_150 Hb_000085_150 Hb_144166_010--Hb_000085_150 Hb_002078_110 Hb_002078_110 Hb_144166_010--Hb_002078_110 Hb_003124_220 Hb_003124_220 Hb_144166_010--Hb_003124_220 Hb_131646_010 Hb_131646_010 Hb_144166_010--Hb_131646_010 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_001143_180 Hb_001143_180 Hb_000291_060--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_000291_060--Hb_154114_010 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_003096_060--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0465 33.8621 35.9793 28.502 30.4233 35.5988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6184 16.1358 15.0626 9.62529 16.1219

CAGE analysis