Hb_002379_050

Information

Type -
Description -
Location Contig2379: 56986-61323
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11510g
description POPTRDRAFT_726767; hypothetical protein
nr
ID XP_012072334.1
description PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
swissprot
ID Q94AH8
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6 PE=1 SV=2
trembl
ID A0A067L222
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04782 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24979: 56153-61205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002379_050 0.0 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
2 Hb_014361_150 0.0788927422 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
3 Hb_006615_120 0.0828963264 - - PREDICTED: uncharacterized protein LOC105640682 [Jatropha curcas]
4 Hb_000116_060 0.0865678485 - - plant ubiquilin, putative [Ricinus communis]
5 Hb_000718_070 0.088164842 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000230_430 0.0905961371 - - catalytic, putative [Ricinus communis]
7 Hb_000162_280 0.0952906888 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
8 Hb_003124_220 0.0976746996 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
9 Hb_000069_590 0.0982220281 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
10 Hb_000186_330 0.098425223 - - PREDICTED: uncharacterized protein LOC105650086 [Jatropha curcas]
11 Hb_000260_440 0.099686074 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
12 Hb_000625_120 0.0998855624 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
13 Hb_005306_160 0.1001987735 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
14 Hb_002078_110 0.1029201448 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
15 Hb_000656_250 0.1030140574 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
16 Hb_001077_030 0.1030168216 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
17 Hb_002046_110 0.1036340074 - - PREDICTED: TBC1 domain family member 15 isoform X2 [Jatropha curcas]
18 Hb_003640_040 0.1036591358 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
19 Hb_143766_110 0.1038498426 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
20 Hb_001140_030 0.1039102804 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]

Gene co-expression network

sample Hb_002379_050 Hb_002379_050 Hb_014361_150 Hb_014361_150 Hb_002379_050--Hb_014361_150 Hb_006615_120 Hb_006615_120 Hb_002379_050--Hb_006615_120 Hb_000116_060 Hb_000116_060 Hb_002379_050--Hb_000116_060 Hb_000718_070 Hb_000718_070 Hb_002379_050--Hb_000718_070 Hb_000230_430 Hb_000230_430 Hb_002379_050--Hb_000230_430 Hb_000162_280 Hb_000162_280 Hb_002379_050--Hb_000162_280 Hb_000260_440 Hb_000260_440 Hb_014361_150--Hb_000260_440 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_004129_070 Hb_004129_070 Hb_006615_120--Hb_004129_070 Hb_006615_120--Hb_000162_280 Hb_009112_010 Hb_009112_010 Hb_006615_120--Hb_009112_010 Hb_000174_060 Hb_000174_060 Hb_006615_120--Hb_000174_060 Hb_002276_240 Hb_002276_240 Hb_006615_120--Hb_002276_240 Hb_001033_050 Hb_001033_050 Hb_006615_120--Hb_001033_050 Hb_001243_060 Hb_001243_060 Hb_000116_060--Hb_001243_060 Hb_003680_230 Hb_003680_230 Hb_000116_060--Hb_003680_230 Hb_000116_060--Hb_000162_280 Hb_001377_070 Hb_001377_070 Hb_000116_060--Hb_001377_070 Hb_000116_060--Hb_009112_010 Hb_003040_020 Hb_003040_020 Hb_000116_060--Hb_003040_020 Hb_001077_030 Hb_001077_030 Hb_000718_070--Hb_001077_030 Hb_002311_070 Hb_002311_070 Hb_000718_070--Hb_002311_070 Hb_003124_220 Hb_003124_220 Hb_000718_070--Hb_003124_220 Hb_004631_190 Hb_004631_190 Hb_000718_070--Hb_004631_190 Hb_000718_070--Hb_003680_230 Hb_001140_030 Hb_001140_030 Hb_000718_070--Hb_001140_030 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_000162_280--Hb_009112_010 Hb_000070_080 Hb_000070_080 Hb_000162_280--Hb_000070_080 Hb_003633_070 Hb_003633_070 Hb_000162_280--Hb_003633_070 Hb_000680_090 Hb_000680_090 Hb_000162_280--Hb_000680_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.5584 57.4717 42.9922 33.8914 50.9015 38.4887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3123 15.3049 32.3663 18.6294 14.7455

CAGE analysis