Hb_000260_440

Information

Type -
Description -
Location Contig260: 273402-278331
Sequence    

Annotation

kegg
ID rcu:RCOM_1323300
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012090964.1
description PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
swissprot
ID Q8GXZ3
description Serine/threonine-protein kinase At5g01020 OS=Arabidopsis thaliana GN=At5g01020 PE=1 SV=1
trembl
ID A0A067JDB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00604 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase at5g01020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27002: 273436-278199 , PASA_asmbl_27004: 275298-275594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_440 0.0 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
2 Hb_143766_110 0.0699742621 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
3 Hb_000777_050 0.0748887597 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
4 Hb_014361_150 0.0767780154 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
5 Hb_000291_060 0.0799270039 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
6 Hb_007765_080 0.0808311489 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
7 Hb_001635_040 0.0817957876 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
8 Hb_001377_320 0.0818136243 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
9 Hb_003813_040 0.0843156776 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
10 Hb_003680_230 0.0856642599 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
11 Hb_000162_030 0.0862272394 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
12 Hb_006816_050 0.0870879577 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
13 Hb_001077_030 0.0879937431 - - PREDICTED: somatic embryogenesis receptor kinase 1 isoform X2 [Jatropha curcas]
14 Hb_004357_020 0.0888573042 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
15 Hb_000718_070 0.0901055363 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000125_200 0.0910004176 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
17 Hb_001143_180 0.0924648331 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
18 Hb_002686_250 0.0925008483 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
19 Hb_000084_250 0.093276776 - - nucleolar phosphoprotein, putative [Ricinus communis]
20 Hb_002078_110 0.0932921086 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]

Gene co-expression network

sample Hb_000260_440 Hb_000260_440 Hb_143766_110 Hb_143766_110 Hb_000260_440--Hb_143766_110 Hb_000777_050 Hb_000777_050 Hb_000260_440--Hb_000777_050 Hb_014361_150 Hb_014361_150 Hb_000260_440--Hb_014361_150 Hb_000291_060 Hb_000291_060 Hb_000260_440--Hb_000291_060 Hb_007765_080 Hb_007765_080 Hb_000260_440--Hb_007765_080 Hb_001635_040 Hb_001635_040 Hb_000260_440--Hb_001635_040 Hb_001405_190 Hb_001405_190 Hb_143766_110--Hb_001405_190 Hb_000162_030 Hb_000162_030 Hb_143766_110--Hb_000162_030 Hb_000264_070 Hb_000264_070 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_007929_080 Hb_007929_080 Hb_143766_110--Hb_007929_080 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_028308_010 Hb_028308_010 Hb_000777_050--Hb_028308_010 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_002379_050 Hb_002379_050 Hb_014361_150--Hb_002379_050 Hb_004357_020 Hb_004357_020 Hb_014361_150--Hb_004357_020 Hb_000760_020 Hb_000760_020 Hb_014361_150--Hb_000760_020 Hb_000125_200 Hb_000125_200 Hb_014361_150--Hb_000125_200 Hb_005306_160 Hb_005306_160 Hb_014361_150--Hb_005306_160 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_001143_180 Hb_001143_180 Hb_000291_060--Hb_001143_180 Hb_154114_010 Hb_154114_010 Hb_000291_060--Hb_154114_010 Hb_002078_110 Hb_002078_110 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_116349_030 Hb_116349_030 Hb_007765_080--Hb_116349_030 Hb_001619_150 Hb_001619_150 Hb_007765_080--Hb_001619_150 Hb_000855_020 Hb_000855_020 Hb_007765_080--Hb_000855_020 Hb_000574_440 Hb_000574_440 Hb_007765_080--Hb_000574_440 Hb_007765_080--Hb_028308_010 Hb_001751_140 Hb_001751_140 Hb_001635_040--Hb_001751_140 Hb_001635_040--Hb_000162_030 Hb_008568_020 Hb_008568_020 Hb_001635_040--Hb_008568_020 Hb_001005_030 Hb_001005_030 Hb_001635_040--Hb_001005_030 Hb_138596_010 Hb_138596_010 Hb_001635_040--Hb_138596_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9158 61.4575 73.127 39.0772 68.5323 62.7301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.9359 20.785 43.0673 32.4341 29.8993

CAGE analysis