Hb_028308_010

Information

Type -
Description -
Location Contig28308: 6494-19607
Sequence    

Annotation

kegg
ID rcu:RCOM_1272330
description zinc finger protein, putative (EC:1.3.1.74)
nr
ID XP_012090815.1
description PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9M1K5
description Probable protein S-acyltransferase 4 OS=Arabidopsis thaliana GN=PAT04 PE=2 SV=1
trembl
ID A0A067JPQ6
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_02880 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable protein s-acyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29618: 6497-6713 , PASA_asmbl_29619: 6756-19614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028308_010 0.0 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
2 Hb_000777_050 0.0626813456 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
3 Hb_001195_560 0.0662862084 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
4 Hb_009296_010 0.0694767616 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
5 Hb_000333_060 0.0711364434 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
6 Hb_002398_030 0.0722376806 - - amino acid binding protein, putative [Ricinus communis]
7 Hb_001619_150 0.0723769006 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1 [Jatropha curcas]
8 Hb_000544_010 0.0748080397 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
9 Hb_002749_110 0.0754384369 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
10 Hb_002684_040 0.0755389427 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
11 Hb_002078_100 0.0779576362 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
12 Hb_001005_030 0.0799186508 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
13 Hb_002272_130 0.0800992608 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
14 Hb_000101_380 0.0803632415 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
15 Hb_007592_030 0.0804298347 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
16 Hb_000002_490 0.0808284828 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
17 Hb_007765_080 0.0808482359 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
18 Hb_002092_080 0.0811006717 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Jatropha curcas]
19 Hb_000044_040 0.0814718693 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_004994_040 0.082307847 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_028308_010 Hb_028308_010 Hb_000777_050 Hb_000777_050 Hb_028308_010--Hb_000777_050 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_000333_060 Hb_000333_060 Hb_028308_010--Hb_000333_060 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030 Hb_001619_150 Hb_001619_150 Hb_028308_010--Hb_001619_150 Hb_002684_040 Hb_002684_040 Hb_000777_050--Hb_002684_040 Hb_011310_210 Hb_011310_210 Hb_000777_050--Hb_011310_210 Hb_003549_090 Hb_003549_090 Hb_000777_050--Hb_003549_090 Hb_001635_040 Hb_001635_040 Hb_000777_050--Hb_001635_040 Hb_002942_050 Hb_002942_050 Hb_000777_050--Hb_002942_050 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_003018_130 Hb_003018_130 Hb_001195_560--Hb_003018_130 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_014361_070 Hb_014361_070 Hb_001195_560--Hb_014361_070 Hb_002823_030 Hb_002823_030 Hb_001195_560--Hb_002823_030 Hb_000470_070 Hb_000470_070 Hb_009296_010--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_009296_010--Hb_002078_100 Hb_019654_040 Hb_019654_040 Hb_009296_010--Hb_019654_040 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_001935_110 Hb_001935_110 Hb_009296_010--Hb_001935_110 Hb_000333_060--Hb_001935_110 Hb_000109_210 Hb_000109_210 Hb_000333_060--Hb_000109_210 Hb_000333_060--Hb_002684_040 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_001635_160 Hb_001635_160 Hb_002398_030--Hb_001635_160 Hb_007765_080 Hb_007765_080 Hb_001619_150--Hb_007765_080 Hb_002092_080 Hb_002092_080 Hb_001619_150--Hb_002092_080 Hb_011618_080 Hb_011618_080 Hb_001619_150--Hb_011618_080 Hb_000855_020 Hb_000855_020 Hb_001619_150--Hb_000855_020 Hb_004912_030 Hb_004912_030 Hb_001619_150--Hb_004912_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9112 6.85034 8.86648 8.00794 12.6334 11.0291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92112 3.55176 5.08857 6.74371 6.97195

CAGE analysis