Hb_000333_060

Information

Type -
Description -
Location Contig333: 43637-48544
Sequence    

Annotation

kegg
ID rcu:RCOM_0712100
description rad7, putative
nr
ID XP_012077043.1
description PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
swissprot
ID Q9LPL4
description F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1
trembl
ID A0A067KCG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34920: 43794-43922 , PASA_asmbl_34922: 45057-45454 , PASA_asmbl_34923: 46179-48454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000333_060 0.0 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
2 Hb_001935_110 0.0626034095 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
3 Hb_028308_010 0.0711364434 - - PREDICTED: probable protein S-acyltransferase 4 isoform X1 [Jatropha curcas]
4 Hb_000109_210 0.0733535715 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
5 Hb_002684_040 0.0750392964 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
6 Hb_002078_100 0.0780699616 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
7 Hb_007632_240 0.0795061514 - - transporter, putative [Ricinus communis]
8 Hb_000544_010 0.0797330659 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
9 Hb_000556_190 0.0820286727 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_011930_160 0.0821865411 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
11 Hb_001427_190 0.0832551769 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
12 Hb_004994_040 0.0843570027 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
13 Hb_000470_070 0.0843687782 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
14 Hb_002272_130 0.0868397616 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
15 Hb_009296_010 0.0872201748 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
16 Hb_012053_080 0.0873129555 - - AP-2 complex subunit alpha, putative [Ricinus communis]
17 Hb_001623_480 0.0873571307 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
18 Hb_000920_210 0.08760156 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
19 Hb_001454_370 0.0876470637 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
20 Hb_000317_250 0.087684934 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000333_060 Hb_000333_060 Hb_001935_110 Hb_001935_110 Hb_000333_060--Hb_001935_110 Hb_028308_010 Hb_028308_010 Hb_000333_060--Hb_028308_010 Hb_000109_210 Hb_000109_210 Hb_000333_060--Hb_000109_210 Hb_002684_040 Hb_002684_040 Hb_000333_060--Hb_002684_040 Hb_002078_100 Hb_002078_100 Hb_000333_060--Hb_002078_100 Hb_007632_240 Hb_007632_240 Hb_000333_060--Hb_007632_240 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_019654_040 Hb_019654_040 Hb_001935_110--Hb_019654_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100 Hb_000777_050 Hb_000777_050 Hb_028308_010--Hb_000777_050 Hb_001195_560 Hb_001195_560 Hb_028308_010--Hb_001195_560 Hb_009296_010 Hb_009296_010 Hb_028308_010--Hb_009296_010 Hb_002398_030 Hb_002398_030 Hb_028308_010--Hb_002398_030 Hb_001619_150 Hb_001619_150 Hb_028308_010--Hb_001619_150 Hb_000109_210--Hb_002684_040 Hb_000109_210--Hb_000470_070 Hb_000109_210--Hb_019654_040 Hb_000983_150 Hb_000983_150 Hb_000109_210--Hb_000983_150 Hb_011174_090 Hb_011174_090 Hb_000109_210--Hb_011174_090 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_002078_100--Hb_000470_070 Hb_002078_100--Hb_009296_010 Hb_000648_100 Hb_000648_100 Hb_002078_100--Hb_000648_100 Hb_174821_010 Hb_174821_010 Hb_002078_100--Hb_174821_010 Hb_000109_100 Hb_000109_100 Hb_002078_100--Hb_000109_100 Hb_002078_100--Hb_019654_040 Hb_003847_130 Hb_003847_130 Hb_007632_240--Hb_003847_130 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_003025_110 Hb_003025_110 Hb_007632_240--Hb_003025_110 Hb_003375_070 Hb_003375_070 Hb_007632_240--Hb_003375_070 Hb_004410_030 Hb_004410_030 Hb_007632_240--Hb_004410_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.31336 2.79412 4.36423 3.23592 6.25039 5.96653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66863 2.01885 2.82781 5.28004 3.70458

CAGE analysis